hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05440/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1850  ( 1245 res)   mbg05440

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
OTU      OTU-like cysteine protease                     117.3    2.8e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
OTU        1/1     238   379 ..     1   157 []   117.3  2.8e-31

Alignments of top-scoring domains:
OTU: domain 1 of 1, from 238 to 379: score 117.3, E = 2.8e-31
                   *->pgDGnCLfravsdqlgldadkdvgdqelheelRemvsglveylrrwe
                       gDG+CL +avs++l        g++  +++lRe++   +++++   
   mKIAA1850   238    DGDGHCLVHAVSRALV-------GRELFWHALRENL---KQHFQ--- 271  

                   edel.aenredfskfleedsGDspdesfeeYikriskdgaWGgeW.....
                     ++ a+++++f++f++                      +W++++++ ++
   mKIAA1850   272 --QHlARYQALFHDFIDAA--------------------EWEDIInecdp 299  

                   ........y.SLEnieiqAlahilrvpIivyd.l........ykl.qsgr
                      ++++ + +L+ni+i+ la++l++pIi++d+l++ +++++y+ ++ ++
   mKIAA1850   300 lfvppegvPlGLRNIHIFGLANVLHRPIILLDsLsgmrssgdYSAtFLPG 349  

                   itvfieiygkylplnkkkpirlsylghLeglgeHY<-*
                    +   +++g++++lnk+ +i +s++g     ++HY   
   mKIAA1850   350 LIPAEKCTGRDGHLNKPICIAWSSSG-----RNHY    379  

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