hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic30056/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1849  ( 1076 res)   mic30056

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RA       Ras association (RalGDS/AF-6) domain            66.6    3.1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1      87   190 ..     1   102 []    66.6  3.1e-15

Alignments of top-scoring domains:
RA: domain 1 of 1, from 87 to 190: score 66.6, E = 3.1e-15
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                      + +vl+V++d+++    g  yk+++++  ++a+++++++le++ l++
   mKIAA1849    87    APGVLKVFGDSVC---TGTHYKSVLATGSSSAQELVKEALERYALDP 130  

                   edpeeYvLvevlp.........sggkErvLlddenPlqlqklwprdaksp
                   e++ +YvL+ v+ + ++++++ + + +rv  d+e+Pl +q+lw ++    
   mKIAA1849   131 ECAGQYVLCDVVGqagdsgqrwQAQCFRVFGDNEKPLLIQELWKPR---- 176  

                   rqsslrFvLrkrdd<-*
                   ++ s+rF Lrk++d   
   mKIAA1849   177 EGLSRRFELRKKSD    190  

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