hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic30056/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1849  ( 1076 res)   mic30056

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DIL      DIL domain                                     123.7    3.4e-33   1
RA       Ras association (RalGDS/AF-6) domain            97.3      3e-25   1
FHA      FHA domain                                      49.5    7.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1      87   190 ..     1    98 []    97.3    3e-25
FHA        1/1     299   374 ..     1    94 []    49.5  7.3e-11
DIL        1/1     660   769 ..     1   113 []   123.7  3.4e-33

Alignments of top-scoring domains:
RA: domain 1 of 1, from 87 to 190: score 97.3, E = 3e-25
                   *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp
                      ++gvl+V+g++ + gt+yk++l++ +++a+e+++++L+++ ld+++ 
   mKIAA1849    87    APGVLKVFGDSVCTGThYKSVLATGSSSAQELVKEALERYALDPECA 133  

                   edyvLvEvslvlerggeer.....rvLpddEkPlqiqlqlkrdaqvrsrF
                   + yvL+ v+++ ++ g+ ++ +  rv++d+EkPl+iq+ +k++++ ++rF
   mKIAA1849   134 GQYVLCDVVGQAGDSGQRWqaqcfRVFGDNEKPLLIQELWKPREGLSRRF 183  

                   lLrrred<-*
                    Lr+++d   
   mKIAA1849   184 ELRKKSD    190  

FHA: domain 1 of 1, from 299 to 374: score 49.5, E = 7.3e-11
                   *->vtiGRdsdsddilldddqdislsg.siSrrHatieykdggvslelaf
                      +t+G       + +++ ++isls+++i + H+ti+++    +++  +
   mKIAA1849   299    HTVGQ------RTPSSKPSISLSApDILPLHCTIRRHQSPEGGPAGT 339  

                   rlaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                   rl         l++  +++    ++vN+ ++ + +pv+L++Gd+++lG  
   mKIAA1849   340 RL--------VLEPITGAS----VSVNFSEV-GRNPVVLQHGDLLSLG   374  

                   *
                    
   mKIAA1849     -   -    

DIL: domain 1 of 1, from 660 to 769: score 123.7, E = 3.4e-33
                   *->qlfsQlFsfinaqlfNsLllrrd.aacCswsrGmqirynlsqLeeWc
                      q+  +lF+f++ +l+N+ l ++++++c++w rG+q++++l+q  eW+
   mKIAA1849   660    QMLAYLFFFSGTLLLNQVLDKGPsLSCFHWPRGVQVCARLQQFLEWA 706  

                   reagledagdLawdeLepLrQavqLLqvkkktkedisddeiicdlCpaLs
                   r+agl++    a+ ++++L+++ +LL++++++++++s+ +++  + paL+
   mKIAA1849   707 RSAGLGAP---AERFFRKLSCTLHLLATPRAQLIQMSWATLRVTF-PALN 752  

                   paQlvkiLtlYqpddye<-*
                   paQl+++Lt+Yq++  +   
   mKIAA1849   753 PAQLHRLLTQYQLASAM    769  

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