hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00047/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1848  ( 408 res)   mbj00047

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                          56.4    3.6e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3        1/1     351   408 .]     1    58 []    56.4  3.6e-12

Alignments of top-scoring domains:
SH3: domain 1 of 1, from 351 to 408: score 56.4, E = 3.6e-12
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks..ddgWweGelnrtGk
                      +++++lYDyea ++ EL + +++ itv +  + d++W+ Ge++  +k
   mKIAA1848   351    RKARVLYDYEAADSSELALLADELITVYSLPgmDPDWLIGERG--NK 395  

                   eGlfPsnYVeeie<-*
                   +G +P +Y+e++    
   mKIAA1848   396 KGKVPVTYLELLS    408  

//