hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00047/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1848  ( 408 res)   mbj00047

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAR      BAR domain                                     259.5    4.6e-74   1
SH3_1    SH3 domain                                      41.0    2.6e-08   1
SH3_2    Variant SH3 domain                              39.5    7.7e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAR        1/1      21   293 ..     1   264 []   259.5  4.6e-74
SH3_1      1/1     351   407 ..     1    58 []    41.0  2.6e-08
SH3_2      1/1     352   407 ..     1    69 []    39.5  7.7e-08

Alignments of top-scoring domains:
BAR: domain 1 of 1, from 21 to 293: score 259.5, E = 4.6e-74
                   *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv
                      l+ +AG ff Ra q+++eK+G aekT+ LD +Fe+l  r+d t++++
   mKIAA1848    21    LASDAGIFFTRAVQFTEEKFGQAEKTE-LDAHFENLLARADSTKNWT 66   

                   kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm
                   +++ ++t+  lqpnp ar++++ +ekl+  r+ ++r ++ +   lLa++m
   mKIAA1848    67 ERILRQTEVLLQPNPSARVEEFLYEKLD--RKVPSRVTNGE---LLAQYM 111  

                   qeigeelgddsedPfGkaLekygeamkqlaqlleqldervkqnfldPltn
                    e+  elg++++  +Gk+L+k++ea+k+l+ ++++++ ++   fl+Pl+n
   mKIAA1848   112 AEAASELGPSTP--YGKTLIKVSEAEKRLGAAERDFIHTASLSFLTPLRN 159  

                   llekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkak........
                   +le++ k+i k+++ l+++rLD+Da+++rlkkak+ + k ++ ++ ++++
   mKIAA1848   160 FLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATTvpdfqetr 209  

                   ..DekklakA........dqleeElrqAqqkfEelneeLkeeLpnllele
                   +++    a A+  ++++ d +e+Elr+Aq +f++++e ++ +L+++++++
   mKIAA1848   210 prNYILSASAsavsndevDKAEQELRVAQTEFDRQAEVTRLLLEGISSTH 259  

                   veflvnqlqafveaqldfhrqsaqlleqlqqqLdk<-*
                   v +l ++l+ fv+ q ++++q++  + +lq qL+    
   mKIAA1848   260 VNHL-RCLHEFVKSQTTYYAQCYRHMLDLQKQLGR    293  

SH3_1: domain 1 of 1, from 351 to 407: score 41.0, E = 2.6e-08
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd...gWWkgrlkgtg
                      +k+++LYDYea +s+EL +   + itv +  ++ +++W+ g++    
   mKIAA1848   351    RKARVLYDYEAADSSELALLADELITVYS-LPGmdpDWLIGERG--- 393  

                   GkeGliPsNYVepv<-*
                   +k+G +P++Y+e+    
   mKIAA1848   394 NKKGKVPVTYLELL    407  

SH3_2: domain 1 of 1, from 352 to 407: score 39.5, E = 7.7e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidv..ggskdddgw
                      ++r++ dy+a +d +e      L+l +++++ v+   +g   +d++w
   mKIAA1848   352    KARVLYDYEA-ADSSE------LALLADELITVY-SlpG---MDPDW 387  

                   wlgeslggGrrrRGlvPssaveel<-*
                     ge+  g+++  G vP +++e l   
   mKIAA1848   388 LIGER--GNKK--GKVPVTYLELL    407  

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