hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfk/mfk00190/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1846 ( 683 res) mfk00190 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- AMP-binding AMP-binding enzyme 424.0 1.3e-123 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- AMP-binding 1/1 136 574 .. 1 377 [] 424.0 1.3e-123 Alignments of top-scoring domains: AMP-binding: domain 1 of 1, from 136 to 574: score 424.0, E = 1.3e-123 *->TYrELderanrlAaaLralGvgpGdrVaillpnspelvvailAvlka TYrEL e +rlA+ L+++Gv +GdrVai++p sp +v+a+lA++++ mKIAA1846 136 TYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVAAMLACARI 182 GaayvPldpsypaerlayiledsgakvlltddalla.l............ Ga++ ++++++ae la +++d+++k+++t ++ l+++ +++ ++ ++++ mKIAA1846 183 GAIHTVVFAGFSAESLAGRINDAKCKAVITFNQGLRgGrvvelkkivdea 232 ....................................s.e.p.ppvdpddl +++ +++ + ++ ++++++ ++ + + + + +++++ ++ ++++d+ mKIAA1846 233 vkscptvqhvlvahrtdtkvpmgsldipleqemakeApVcTpESMSSEDM 282 AyiiYTSGTTGkPKGVmltHrnlvnlvaala.rf.l.pddaervllllpp ++++YTSG+TG+PKG ++t+++++ ++a++ + + + +++ +v+ + ++ mKIAA1846 283 LFMLYTSGSTGTPKGLVHTQAGYLLYAAMTHkLVfDyQPG--DVFGCVAD 330 llhfdgsvweifgpLlaGatlvlvpkfdryrdpealldliekykvTvlfl +++++g+ + ++gpL++Gat vl++ + y+d+++ ++++++ k++ +++ mKIAA1846 331 IGWITGHSYVVYGPLCNGATTVLFESTPVYPDAGRYWETVQRLKINQFYG 380 vPtllrlllkape.....edlssLrlvlsgGealppelarrlrerfgsgg +Pt++rlllk+++ +++d ssLr++ s+Ge+++ e++++l++++g+g+ mKIAA1846 381 APTAVRLLLKYGDawvkkYDRSSLRTLGSVGEPINHEAWEWLHKVVGDGR 430 vrlvngYGpTEttvvatanppg.p.....pgsiGrPlpgvevyvlDeegq ++lv+++++TEt+++++a++p +++ + pg + rP++g+ +++De g+ mKIAA1846 431 CTLVDTWWQTETGGICIAPRPSeDgaeilPGMAMRPFFGIVPVLMDEKGN 480 pvppGvv.GELyirG.wpgvarGYlnrPelTaerFvadgwgpGeRmYrTG +++ G v+G L+i+ wpg+ar ++++++ ++++ g +Y TG mKIAA1846 481 VLEGGDVsGALCISQaWPGMARTIYGDHQRFVDAYFRAYPG----YYFTG 526 DlgrwdpDGyleilGRkDdqvKirGerIepgEiEavLlahPgVaeAaV<- D + +++ Gy+ i+GR+Dd+++i+G+r +++EiE++ + hP+V e aV mKIAA1846 527 DGAHRTEGGYYQITGRMDDVINISGHRLGTAEIEDAMADHPAVPETAV 574 * mKIAA1846 - - //