hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mia/mia34065/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1844  ( 569 res)   mia34065

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WW                                                       39.9    3.4e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WW         1/1     156   188 ..     1    34 []    39.9  3.4e-07

Alignments of top-scoring domains:
WW: domain 1 of 1, from 156 to 188: score 39.9, E = 3.4e-07
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      ++ + W e+++ + G++YYyN  T  +qWekP e   
   mKIAA1844   156    DSADDWSEHISSS-GKKYYYNCRTEVSQWEKPKE    188  

//