hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00533/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1842  ( 263 res)   mbh00533

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Kelch_1  Kelch motif                                     84.8    1.7e-21   2
Kelch_2  Kelch motif                                     40.2    4.6e-08   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Kelch_1    1/2      41    90 ..     1    45 []    51.1  2.5e-11
Kelch_2    1/3      41    90 ..     1    54 []    28.8  0.00012
Kelch_2    2/3      92   130 ..     1    54 []     2.5  1.2e+02
Kelch_1    2/2     132   178 ..     1    45 []    34.2    3e-06
Kelch_2    3/3     132   178 ..     1    54 []     8.8       18

Alignments of top-scoring domains:
Kelch_1: domain 1 of 2, from 41 to 90: score 51.1, E = 2.5e-11
                   *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp
                      +R g+  v++ gk+Y+iGG+  ++++++sl+sve+YD ++n+W  + 
   mKIAA1842    41    ARIGCKLVYCCGKMYAIGGRVYegdgrNSLKSVECYDSRENCWMTVC 87   

                   smp<-*
                    mp   
   mKIAA1842    88 AMP    90   

Kelch_2: domain 1 of 3, from 41 to 90: score 28.8, E = 0.00012
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                       r ++ +v ++gk+y +GG+     ++g+g  s+ ++ ++d ++n+W
   mKIAA1842    41    ARIGCKLVYCCGKMYAIGGR----VYEGDGRNSLKSVECYDSRENCW 83   

                   eklpalp<-*
                     ++a+p   
   mKIAA1842    84 MTVCAMP    90   

Kelch_2: domain 2 of 3, from 92 to 130: score 2.5, E = 1.2e+02
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                       +  h +v   +k+yv  G                 +l++ p++  W
   mKIAA1842    92    AMEFHNAVEHKEKIYVLQGE---------------FFLFYEPQKDYW 123  

                   eklpalp<-*
                     l+++    
   mKIAA1842   124 GFLTPMT    130  

Kelch_1: domain 2 of 2, from 132 to 178: score 34.2, E = 3e-06
                   *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp
                      pR    ++v+++ iY i G +g++q++ +ve+YD e n+Wt+  + p
   mKIAA1842   132    PRIQGLAAVYKDSIYYIAGTCGnhQRVFTVEAYDIELNKWTRKKDFP 178  

                   <-*
                      
   mKIAA1842     -     -    

Kelch_2: domain 3 of 3, from 132 to 178: score 8.8, E = 18
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                      pr + +++v+ + +y + G         ++  + +++  +d e n+W
   mKIAA1842   132    PRIQGLAAVYKDSIYYIAGT-------CGNHQRVFTVEAYDIELNKW 171  

                   eklpalp<-*
                   ++ ++ p   
   mKIAA1842   172 TRKKDFP    178  

//