hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01581/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1839  ( 462 res)   mfj01581

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           53.6    2.5e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/1     367   445 ..     1   121 []    53.6  2.5e-11

Alignments of top-scoring domains:
RRM: domain 1 of 1, from 367 to 445: score 53.6, E = 2.5e-11
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +++V+NL     v e+dL+ +F              +++ +  s   
   mKIAA1839   367    RIYVKNL--ARHVQEKDLKFIF--------------GRYVDFSSETQ 397  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +   d                   ++ G+ kG aFV   +e +A+kA  +
   mKIAA1839   398 RIMFD----------------IRLMKEGRMKGQAFVGLPNEKAAAKA--L 429  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++ n   G++l   G+p   + V+   
   mKIAA1839   430 KEAN---GYVL--FGKP---MVVQ    445  

//