hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01581/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1839  ( 462 res)   mfj01581

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     35.8    9.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/1     368   444 ..     1    74 []    35.8  9.8e-07

Alignments of top-scoring domains:
RRM_1: domain 1 of 1, from 368 to 444: score 35.8, E = 9.8e-07
                   *->lfVgNLppdtteedLkdlFskfGpi..esikivrD.ttretgrskGf
                      ++V+NL + + e+dLk +F+ + ++++e  +i+ D   +  gr kG 
   mKIAA1839   368    IYVKNLARHVQEKDLKFIFGRYVDFssETQRIMFDiRLMKEGRMKGQ 414  

                   aFVeFedeedAekAldalnGkelggrelrv<-*
                   aFV   +e +A+kAl++ nG+ l g+++ v   
   mKIAA1839   415 AFVGLPNEKAAAKALKEANGYVLFGKPMVV    444  

//