hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj06041/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1837  ( 1119 res)   mfj06041

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PKD      Repeats in polycystic kidney disease 1 (PKD1   142.3      5e-38   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PKD        1/5     380   471 ..     1    91 []    14.3     0.54
PKD        2/5     479   568 ..     1    91 []    30.0  0.00033
PKD        3/5     574   664 ..     1    91 []    42.5  5.7e-08
PKD        4/5     670   758 ..     1    91 []    37.7  1.6e-06
PKD        5/5     764   855 ..     1    91 []    40.8  1.8e-07

Alignments of top-scoring domains:
PKD: domain 1 of 5, from 380 to 471: score 14.3, E = 0.54
                   *->vadftasptvgvksiAagesVtFtass.StdedGsivsytWdFGDGs
                      v+++  s++ ++    +  +V+++a +  ++e+G  ++y W ++   
   mKIAA1837   380    VVSAGKSVQITL----PKNEVQLNAFVlPEAEPGETYTYDWQLITHP 422  

                   ......atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvv
                   ++ +++ +  ++++  ++ ++pG Y +++tv   +  +     ++v+V++
   mKIAA1837   423 tdysgeVERKHSQSLQLSKLTPGLYEFKVTVDGQN--AHGEGYVNVTVKP 470  

                   p<-*
                   +   
   mKIAA1837   471 E    471  

PKD: domain 2 of 5, from 479 to 568: score 30.0, E = 0.00033
                   *->vadftasptvgvksiAagesVtFtass.StdedGsivsytWdFGDGs
                      va+++++ ++      ++++ t+ + s+Std+d  iv y+W     +
   mKIAA1837   479    VAVVSPQFQEIS----LPTTSTIIDGSqSTDDDK-IVQYHWE----E 516  

                   ......atsstg..ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvV
                    +++ + + ++++++   ++ + pG+Yt++Ltv +++G +++s+t++++V
   mKIAA1837   517 lkgplrEEKISEdtAILKLSKLVPGNYTFSLTVVDSDG-ATNSTTASLTV 565  

                   vvp<-*
                         
   mKIAA1837   566 NKA    568  

PKD: domain 3 of 5, from 574 to 664: score 42.5, E = 5.7e-08
                   *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGsa
                      va++ ++   ++    ++ s+t+ + +Std+ G i+sy+W++     
   mKIAA1837   574    VANAGPNQVITL----PQNSITLFGNQSTDDHG-ITSYEWSLSPS-- 613  

                   tsstgptvtHtYtkp..........GtYtVtLtvtnavGnssssatktvv
                     s g+ v +   +++  + +  ++G+Yt +Ltvt+ +G + ++a++tv+
   mKIAA1837   614 --SKGKVVEMQGVRTpalqlsamqeGDYTYQLTVTDTAG-QQATAQVTVI 660  

                   Vvvp<-*
                   V+++   
   mKIAA1837   661 VQPE    664  

PKD: domain 4 of 5, from 670 to 758: score 37.7, E = 1.6e-06
                   *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGs.
                       ad+ + ++ ++    +  s t+++s Std+    vsy+W    G +
   mKIAA1837   670    QADAGPDKELTL----PVDSTTLDGSKSTDDQR-VVSYLWEQSRGPd 711  

                   ...atsstgptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVvvp<-
                   + + + +++  +t+t +++GtY +tLtv+++  n+ s  +++v+V+++  
   mKIAA1837   712 gvqLENANSSVATVTGLQVGTYVFTLTVKDER-NLQSQSSVNVIVKEE   758  

                   *
                    
   mKIAA1837     -   -    

PKD: domain 5 of 5, from 764 to 855: score 40.8, E = 1.8e-07
                   *->vadftasptvgvksiAagesVtFtassStdedGsivsytWdFGDGs.
                      va +  ++ v++    ++ ++ +++s S+d+ G ivsy+W+  D ++
   mKIAA1837   764    VAKIAGNVVVTL----PTSTAELDGSRSSDDKG-IVSYLWTR-DETs 804  

                   ...atsstg....ptvtHtYtkpGtYtVtLtvtnavGnssssatktvvVv
                   +  +++++ ++++p   ++ + +GtYt++L+vt+a+G +s+++ +tv+V+
   mKIAA1837   805 paaGEVLNHsdhhPVLFLSNLVEGTYTFHLKVTDAKG-ESDTDRTTVEVK 853  

                   vp<-*
                   +    
   mKIAA1837   854 PD    855  

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