hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj06041/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1837 ( 1119 res) mfj06041 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PKD PKD domain 20.6 0.036 3 fn3 Fibronectin type III domain 3.8 0.62 1 REJ REJ domain -303.4 0.073 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- fn3 1/1 478 556 .. 1 84 [] 3.8 0.62 PKD 1/3 577 661 .. 1 92 [] 9.4 0.9 PKD 2/3 681 755 .. 1 92 [] 13.1 0.4 PKD 3/3 767 852 .. 1 92 [] 12.3 0.47 REJ 1/1 397 876 .. 1 595 [] -303.4 0.073 Alignments of top-scoring domains: fn3: domain 1 of 1, from 478 to 556: score 3.8, E = 0.62 *->PsaPtnltvtdv...tstsltlsWspptgngpitgYevtyRqpkngg P a+ +++ +++ +t++++ + + +++ + v+y++++ +g mKIAA1837 478 PVAVVSPQFQEIslpTTSTII---DGS--QSTDDDKIVQYHWEELKG 519 ewneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-* + +e ++ +t l+ L+Pg +Y+++++ v+ + + + mKIAA1837 520 PLREEKISEDTAILKLSKLVPG-NYTFSLTVVDSD--GAT 556 PKD: domain 1 of 3, from 577 to 661: score 9.4, E = 0.9 *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGDggst + ++ + ++ ++t+ + S+d+ g ++sy+W+ mKIAA1837 577 AGPN-----QVITLPQNSITLFGNQSTDDH-G-ITSYEWSLSP---- 612 gltstepnvtHtYskg.....sVt.pGtYtVtLtvsNgvgsasattttvt +s ++ v +++ + s ++G+Yt +Ltv++ +g ++ ++tv mKIAA1837 613 --SSKGKVVEMQGVRTpalqlSAMqEGDYTYQLTVTDTAGQQATAQVTVI 660 V<-* V mKIAA1837 661 V 661 PKD: domain 2 of 3, from 681 to 755: score 13.1, E = 0.4 *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD..gg ++++ + t+ +s +++d + vsy+W +++g mKIAA1837 681 LPVD-------------STTLDGSK-STDD-QRVVSYLWEQSRgpDG 712 stgltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-* + + +++ +t+t ++ GtY tLtv+++ ++ s+++++v V mKIAA1837 713 VQLENANSSVATVTGLQ----VGTYVFTLTVKDERNLQSQSSVNVIV 755 PKD: domain 3 of 3, from 767 to 852: score 12.3, E = 0.47 *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD...g ++++ v + t+++ +s S+d+ g +vsy+W+ + +++ mKIAA1837 767 IAGN-----VVVTLPTSTAELDGSRSSDDK-G-IVSYLWTRDEtspA 806 gstgltstepnvtHtYskgsVt.pGtYtVtLtvsNgvgsasattttvtV< + +l ++ ++ s+ +GtYt L+v++++g + + +ttv+V mKIAA1837 807 AGEVLNHSDHHPVLFLSN---LvEGTYTFHLKVTDAKGESDTDRTTVEV 852 -* mKIAA1837 - - REJ: domain 1 of 1, from 397 to 876: score -303.4, E = 0.073 *->tleasVdlkccdaytieykWqiFsvasvdddPHFAsdrtnGAapsFP l+a V t y Wq + + d mKIAA1837 397 QLNAFVLPEAEPGETYTYDWQLITHPT---------DYS-------- 426 vlvLPafvdVsrtrlqlhiPrlaLpyGvYvfnFtvSielktskvPtlkks ++v+ +++ +l + +l+ G Y f tv ++ mKIAA1837 427 -----GEVERKHSQ-SLQLSKLT--PGLYEFKVTVDGQ-------NAHGE 461 iivylwVqaerL.....vAVieGgayrvwsftqdLiLdGSkSYDPdadpg v+++V +e+ +++++vAV t i+dGS+S D + mKIAA1837 462 GYVNVTVKPEPRknrppVAVVSPQFQEISLPTTSTIIDGSQSTD-----D 506 sqsnLqFfWyCvtsprdymgssllvasqnvchpcqlnlgwpgssGsSVlt + +q++W+ +++ + ++ + mKIAA1837 507 DKI-VQYHWE---E------------LKGPLREEKISED--TAI------ 532 ippetLeAnveYtFrL.vIsKegritefTdqtVhvlsGllPivhisCIsN + +++L + YtF L+v+ +g t +T+ v v + N mKIAA1837 533 LKLSKLVPG-NYTFSLtVVDSDGA-TNSTTASLTVNK----AVDYPPVAN 576 Caqa.lyevdRfS..LvllrGtCtNCdsENgddsyrWSilSlsnkelvlD +++++++ ++S +L+ + + d + g sy WS+ +s + +v mKIAA1837 577 AGPNqVITLPQNSitLFGN----QSTD-DHGITSYEWSLSPSSKGKVV-- 619 wsgqTtTGsnGpYLVlKpfafrsfeeyGsftLsVtgsswdseGvAsislh ++ q G p L l + y L+Vt+ + A+ + mKIAA1837 620 EM-Q---GVRTPALQLSAM---QEGDY-TYQLTVTDTAGQ---QATAQVT 658 pvvi...NhPPagGsCklnPaeEtGqEHGDKEDEvWrgiaL.lTkftveC +v +++N PP+ P++ +L+++ t mKIAA1837 659 VIVQpenNKPPQA---DAGPDK---------------ELTLpVDSTTLDG 690 SnFrDlevedePLtYkiivsrlrsVgDWeissyc.EnFlGsvlYeGSaPi S +D Y sr +++ En S + mKIAA1837 691 SKSTD---DQRVVSYLWEQSRGP-------DGVQlENAN------SSVAT 724 kpgafLPVGfstdqydvsLyVqVyD....slGAasqvllkAtvvvPTdpa + G + y+ L +V+D+++ + ++ v k P++ mKIAA1837 725 VT------GLQVGTYVFTL--TVKDernlQSQSSVNVIVKEEINKPPVAK 766 ssknvLqqLLsvlllpeSlLstLLqkgDfqqageL......slvLiSVLN nv++ L ++ L + D + + +L +++++s + + VLN mKIAA1837 767 IAGNVVVTLPTSTA----ELDGSRSSDDKGIVSYLwtrdetSPAAGEVLN 812 eieqeddsvvseveRddRarlRknLvdqllaLpvnTvddIqQssAaLAkl + + + ++nLv+ ++ + d + s + + mKIAA1837 813 H-SDHHP-----------VLFLSNLVEGTYTFHLKVTDAKGESDTDRTTV 850 Tqk....srElsceeqkkatlrllea<-* +k++++++ l + ++l e mKIAA1837 851 EVKpdprKSNLVEIILDVNVSQLTER 876 //