hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj07073/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1836  ( 702 res)   msj07073

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      51.1    1.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     544   658 ..     1    92 []    51.1  1.5e-10

Alignments of top-scoring domains:
C2: domain 1 of 1, from 544 to 658: score 51.1, E = 1.5e-10
                   *->tLtvkiisArnLp..........DPYVkvs............kTkvv
                       +++ i+++ nLp +++ ++++ D +V+++ + +++++ +++kT vv
   mKIAA1836   544    EMHLIIVRGMNLPappgvtpddlDAFVRFEfhypnsdqaqksKTAVV 590  

                   kktlsgfNPvWnEesetFeFevpp...........s.LeieVyDk.....
                   k+t+   +P++++    F++++++++++ ++  +++++++e+++k++  +
   mKIAA1836   591 KNTN---SPEFEQ---VFKLNINRnhrgfrrviqsKgIKFEIFHKgsffr 634  

                   ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   +++++G++ +               l++l+++ + ++    
   mKIAA1836   635 sdKLVGTAHLK--------------LERLEkECEIrEI    658  

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