hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj07073/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1836  ( 702 res)   msj07073

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                       26.4    0.00065   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     545   643 ..     1    88 []    26.4  0.00065

Alignments of top-scoring domains:
C2: domain 1 of 1, from 545 to 643: score 26.4, E = 0.00065
                   *->LrVtvieAknLppkDfkng..ksDPYVkvslggdkkd..qkkkTkvi
                      +++ ++++ nLp+      ++  D++V+++++   +d+ qk kT v+
   mKIAA1836   545    MHLIIVRGMNLPAPP-GVTpdDLDAFVRFEFHYPNSDqaQKSKTAVV 590  

                   kktlNPvWNEtFtFevpppd......lqe.tLeieVyDydrfgr.ddflG
                   k+t +P+++++F ++++ ++++ ++  q++ +++e++++++f r+d+++G
   mKIAA1836   591 KNTNSPEFEQVFKLNINRNHrgfrrvIQSkGIKFEIFHKGSFFRsDKLVG 640  

                   evs<-*
                   +++   
   mKIAA1836   641 TAH    643  

//