hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph00586/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1835  ( 646 res)   mph00586

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_RI   Leucine rich repeat, ribonuclease inhibitor    146.3    3.2e-39   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_RI     1/8     105   132 ..     1    28 []    23.1    0.039
LRR_RI     2/8     168   195 ..     1    28 []    25.9   0.0056
LRR_RI     3/8     198   225 ..     1    28 []    25.1   0.0098
LRR_RI     4/8     264   291 ..     1    28 []     2.8  1.1e+02
LRR_RI     5/8     292   319 ..     1    28 []    31.3  0.00014
LRR_RI     6/8     320   347 ..     1    28 []     3.1       98
LRR_RI     7/8     349   376 ..     1    28 []    11.9      5.6
LRR_RI     8/8     377   404 ..     1    28 []    29.8  0.00036

Alignments of top-scoring domains:
LRR_RI: domain 1 of 8, from 105 to 132: score 23.1, E = 0.039
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                         L+ L+L++N++g e ar++a+aL+    
   mKIAA1835   105    FDGLEALRLEGNTVGVEAARVIAKALEK    132  

LRR_RI: domain 2 of 8, from 168 to 195: score 25.9, E = 0.0056
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                         L eLdLs+N +g++G+r + ++Lks   
   mKIAA1835   168    GAQLVELDLSDNAFGPDGVRGFEALLKS    195  

LRR_RI: domain 3 of 8, from 198 to 225: score 25.1, E = 0.0098
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                        +L+eL L+n++ g+ G++ La+aL++   
   mKIAA1835   198    CFTLQELKLNNCGMGIGGGKILAAALTE    225  

LRR_RI: domain 4 of 8, from 264 to 291: score 2.8, E = 1.1e+02
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                        +L+e +  +N++   G+ aLa+a +    
   mKIAA1835   264    IGTLEEVHMPQNGINHPGVTALAQAFAI    291  

LRR_RI: domain 5 of 8, from 292 to 319: score 31.3, E = 0.00014
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      np Lr+++L++N+++++G+ a+ae+Lk    
   mKIAA1835   292    NPLLRVINLNDNTFTEKGGVAMAETLKT    319  

LRR_RI: domain 6 of 8, from 320 to 347: score 3.1, E = 98
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      ++  ++++ +++ +  +Ga a+a a +    
   mKIAA1835   320    LRQVEVINFGDCLVRSKGAVAIADAVRG    347  

LRR_RI: domain 7 of 8, from 349 to 376: score 11.9, E = 5.6
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +p+L+eL+Ls + +  + a + aea ++   
   mKIAA1835   349    LPKLKELNLSFCEIKRDAALVVAEAVAD    376  

LRR_RI: domain 8 of 8, from 377 to 404: score 29.8, E = 0.00036
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +  L++LdL++N lg+eG+ +L e+  s   
   mKIAA1835   377    KAELEKLDLNGNALGEEGCEQLQEVMDS    404  

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