hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00394/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1834  ( 468 res)   mbg00394

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
ELMO_CED12 ELMO/CED-12 family                           173.8    2.7e-48   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
ELMO_CED12   1/1      58   232 ..     1   184 []   173.8  2.7e-48

Alignments of top-scoring domains:
ELMO_CED12: domain 1 of 1, from 58 to 232: score 173.8, E = 2.7e-48
                   *->pdhqelLkalwkllfpdatnevqkilDiieltgGsGaG..nvlvSeq
                      + +++ + +l++++f+ +        D     +GsG  ++    ++ 
   mKIAA1834    58    QAQRDIIFELRRIAFDAE-------SDP-SNVPGSGTEkrKAMYTKD 96   

                   WkemGFQGdidPsTDFRGcPPGfLaLenLlyFAenyptslqrllskqrgd
                   +k +GF   i+P+ DF  +PPG+LaL+n+ly+A+  ++ + r++++++++
   mKIAA1834    97 YKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSR 146  

                   raeweyPFAvvgINiTfiliqlLrlgalkpefnrlavFlkmlfetesaFd
                   ++++e+PF++  I++T++l+++L +g+l +e+ +    ++m+f++++aF+
   mKIAA1834   147 EDKHECPFGRSAIELTKMLCEILQVGELPNEGRNDY--HPMFFTHDRAFE 194  

                   alyCiafhlfdrqWlemqartimefntVlksvreqlere<-*
                   +l+ i+ +l++++W+em+a t+++fn+V+++vreq+ r+   
   mKIAA1834   195 ELFGICIQLLNKTWKEMRA-TAEDFNKVMQVVREQITRA    232  

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