hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08559/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1833  ( 1144 res)   mbg08559

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HEAT     HEAT repeat                                     23.8      0.004   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HEAT       1/5      53    89 ..     1    36 []    13.2      3.4
HEAT       2/5     268   304 ..     1    36 []     4.4       60
HEAT       3/5     435   471 ..     1    36 []     4.5       57
HEAT       4/5     807   843 ..     1    36 []     3.4       81
HEAT       5/5    1002  1038 ..     1    36 []     0.6    2e+02

Alignments of top-scoring domains:
HEAT: domain 1 of 5, from 53 to 89: score 13.2, E = 3.4
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++++++l  +ll+ ++D+dp+V+e++++aL++l +     
   mKIAA1833    53    RpYIKRLSFTLLDSITDKDPMVQEQVCSALCSLGDAQ    89   

HEAT: domain 2 of 5, from 268 to 304: score 4.4, E = 60
                   *->e.lldellplll.kllnDpdpeVReaAaeaLgalaevl<-*
                      +++      +l++++l++ d++ R+a++ aLg ++  l   
   mKIAA1833   268    AdIF-GAYDVLFhHWLQSRDAKLRLAVVAALGPMSHLL    304  

HEAT: domain 3 of 5, from 435 to 471: score 4.5, E = 57
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      e  ++ +l      l D++++V++a+++ ++a+a +    
   mKIAA1833   435    EaKQPFILSSMRLPLLDTNDKVKRAVVQVISAMAHHG    471  

HEAT: domain 4 of 5, from 807 to 843: score 3.4, E = 81
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++ +++l   ++++n +dp  ++  +++L+ +++ +   
   mKIAA1833   807    ArVESDILRSMFQCFNTKDPALKLCLVQSLCMVSQAM    843  

HEAT: domain 5 of 5, from 1002 to 1038: score 0.6, E = 2e+02
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       + l  l+ l+   + D+    R+ A+ ++ +l+      
   mKIAA1833  1002    FhNLGLLVGLFAPRCADTWTTTRQKAVGCVYSLLYLQ    1038 

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