hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12107/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1830  ( 477 res)   mpm12107

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Thioredoxin   Thioredoxin                               126.2    6.1e-34   1
Calsequestrin Calsequestrin                             -92.1      0.049   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Thioredoxin     1/1      50   155 ..     1   114 []   126.2  6.1e-34
Calsequestrin   1/1       2   379 ..     1   386 []   -92.1    0.049

Alignments of top-scoring domains:
Thioredoxin: domain 1 of 1, from 50 to 155: score 126.2, E = 6.1e-34
                   *->vvvvltdenFdeevlkaksdkpVLVdFyApWCGpCKmlAPeyeklAq
                      + v+  +e+F++  +k   d+++LVdFyApWCG+CK+l+P++ + + 
   mKIAA1830    50    GFVEDLNESFKD-NRK---DDIWLVDFYAPWCGHCKKLEPIWNEVGL 92   

                   eykgesddvkfaKVDaDenpkdlAskygVrgfPTlkffknGkkepvdyvg
                   e+k  +++vk+ K+Da++   ++As++gVrg+PT+k++k+       y g
   mKIAA1830    93 EMKSIGSPVKVGKMDATSYS-SIASEFGVRGYPTIKLLKGDLA--YNYRG 139  

                   GArtkddLvafikkhlg<-*
                   + rtkdd+++f  + +g   
   mKIAA1830   140 P-RTKDDIIEFAHRVSG    155  

Calsequestrin: domain 1 of 1, from 2 to 379: score -92.1, E = 0.049
                   *->krphLvlAaLlLlvsgtpklGvrgeeGLdFPeYDGkDRvislseKny
                       +    l +L L++  tp++ + +     +        vi l +   
   mKIAA1830     2    GGSLHYLSLLALIAGFTPRSMANAVGRRSWAALRLCAAVILLDLAVC 48   

                   KqvlKKYevLaLlYHEpvedDKasqrqF........eleEliLELaAqvL
                   K  +   e L   + +  +dD      + +  ++ ++le +  E+    L
   mKIAA1830    49 KGFV---EDLNESFKDNRKDDIWLVDFYapwcghckKLEPIWNEVG---L 92   

                   EdKgvG....FglvDsekdAavAKKLGldEedslYvlKgDeviEyDGEFs
                   E K +G++ + g +D+     +A   G+     +  lKgD    y G  +
   mKIAA1830    93 EMKSIGspvkVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRT 142  

                   ADtlvEFLLDvlEDPvEliegkrElqAFEnieDeiKLiGyFKsedsEhYK
                    D ++EF   v      li      q F+++    ++   +   +s    
   mKIAA1830   143 KDDIIEFAHRV---SGALIRPLPSQQMFDHVRKRHRVFFVYIGGESPLKE 189  

                   AfEdAAEeFhPYikFFAtFDkkvAKkLtLKlnEiDfYEpFmdEPitiPdK
                    + dAA e   Y  FF   +  v   +tLK  E+     F d+   + d 
   mKIAA1830   190 KYIDAASELIVYTYFFSASEDVVPEYVTLK--EMPAVLVFKDDTYFVYDE 237  

                   PnsEeEiveFvkeHkRptLRkLrPesmyEtWEDDlnGiHivAFAEesDPD
                    + + ++  ++   +      +    +yE   D    + i    E++   
   mKIAA1830   238 -YEDGDLSSWISRERFQNYLTMDGFLLYE-LGDTGKLVAIAVIDEKNTSL 285  

                   GyEFLe.ilKevArDntd..nPDLsiiWiDPdDFPLLvpYWEktFkiDLs
                    +  L++i++evArD  d+   D     +D +D      Y       +L 
   mKIAA1830   286 EHTRLKsIIQEVARDFRDhfHRDFQFGHMDGND------YINTLLMDELT 329  

                   kPqiGvvnvtDADsvWmeidDeeDLPtaeELEDWiEDvLeGeintEDDDd
                    P i v n        ++    +    a ++  +i  +L+G +     D 
   mKIAA1830   330 VPTIVVLNTSNQQYFLLDRHIKD----ASDMVQFINSILDGTVPAQGGDS 375  

                   dddD<-*
                     +    
   mKIAA1830   376 IFQR    379  

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