hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09179/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1824  ( 959 res)   mbg09179

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   141.9      7e-38   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6      55    95 ..     1    46 []    32.5  5.9e-05
WD40       2/6     103   142 ..     1    46 []    23.3    0.035
WD40       3/6     145   184 ..     1    46 []    37.2  2.2e-06
WD40       4/6     192   229 ..     1    46 []     6.5       46
WD40       5/6     277   321 ..     1    46 []    14.1      2.9
WD40       6/6     335   374 ..     1    46 []    29.9  0.00036

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 55 to 95: score 32.5, E = 5.9e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + l gH g   V+++ fs +g     +++l+sg++D+ + lW
   mKIAA1824    55    RnLYKKDLLGHFG--CVNAIEFSNNG-----GQWLVSGGdDRRVLLW 94   

                   d<-*
                   +   
   mKIAA1824    95 H    95   

WD40: domain 2 of 6, from 103 to 142: score 23.3, E = 0.035
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        k+++    H +   + ++af++ +      + ++sg++D ++ l 
   mKIAA1824   103    RvKPIQLKGEHHS--NIFCLAFNSGN------TKVFSGGnDEQVILH 141  

                   d<-*
                   d   
   mKIAA1824   142 D    142  

WD40: domain 3 of 6, from 145 to 184: score 37.2, E = 2.2e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ l ++  H++  +V+++++sp +     +n++as+s+Dg + +W
   mKIAA1824   145    SsETLDVFA-HED--AVYGLSVSPVN-----DNIFASSSdDGRVLIW 183  

                   d<-*
                   d   
   mKIAA1824   184 D    184  

WD40: domain 4 of 6, from 192 to 229: score 6.5, E = 46
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +l+ ++   +  + +sv f+p       p+lla++ +   + lW
   mKIAA1824   192    EpFCLANYP---S--AFHSVMFNPVE-----PRLLATANsKEGVGLW 228  

                   d<-*
                   d   
   mKIAA1824   229 D    229  

WD40: domain 5 of 6, from 277 to 321: score 14.1, E = 2.9
                   *->t.kllrtlkgHtge...spVtsvafspdggssdspnllasgs.Dgti
                      ++ +++ ++  +g  +++   s++f  d      +++++sgs+D ++
   mKIAA1824   277    SrLPVFQFD-NQGYfnsCTMKSCCFAGDR-----DQYILSGSdDFNL 317  

                   rlWd<-*
                   ++W+   
   mKIAA1824   318 YMWK    321  

WD40: domain 6 of 6, from 335 to 374: score 29.9, E = 0.00036
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   ++lkgH++   V+ v+f+p+        +++s++  + i++W
   mKIAA1824   335    VnGAFMVLKGHRS--IVNQVRFNPHT------YMICSSGvEKIIKIW 373  

                   d<-*
                   +   
   mKIAA1824   374 S    374  

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