hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09179/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1824  ( 959 res)   mbg09179

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       128.0    1.7e-34   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/5      57    95 ..     1    38 []    35.0  1.8e-06
WD40       2/5     105   142 ..     1    38 []    19.4    0.085
WD40       3/5     146   184 ..     1    38 []    33.7  4.1e-06
WD40       4/5     283   321 ..     1    38 []    14.7      2.2
WD40       5/5     337   374 ..     1    38 []    28.5  0.00016

Alignments of top-scoring domains:
WD40: domain 1 of 5, from 57 to 95: score 35.0, E = 1.8e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ l gH + V+++ fs ++g++l+sg++D+ + +W+   
   mKIAA1824    57    LYKKDLlGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWH    95   

WD40: domain 2 of 5, from 105 to 142: score 19.4, E = 0.085
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++  + H s + c+af+    + ++sg+ D  + + d   
   mKIAA1824   105    KPIQLKgEHHSNIFCLAFNSG-NTKVFSGGNDEQVILHD    142  

WD40: domain 3 of 5, from 146 to 184: score 33.7, E = 4.1e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +    +H+++V+ +++sp + +++as+S+Dg + iWd   
   mKIAA1824   146    SETLDVfAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWD    184  

WD40: domain 4 of 5, from 283 to 321: score 14.7, E = 2.2
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +     +  + +  +++f+ d  ++++sgS+D ++++W+   
   mKIAA1824   283    QFDNQGyFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWK    321  

WD40: domain 5 of 5, from 337 to 374: score 28.5, E = 0.00016
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                          vl+gH s V+ v+f+p+   +++s++  + ikiW+   
   mKIAA1824   337    GAFMVLkGHRSIVNQVRFNPH-TYMICSSGVEKIIKIWS    374  

//