hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh00306/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1823 ( 376 res) mbh00306 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PHD PHD zinc finger 34.5 1.4e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PHD 1/2 93 144 .. 1 39 [] 19.4 0.51 PHD 2/2 291 342 .. 1 39 [] 23.0 0.042 Alignments of top-scoring domains: PHD: domain 1 of 2, from 93 to 144: score 19.4, E = 0.51 *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple.......epdg.wy +C++C+ +g +++Cd k+C r yH++C+ ++ + +++++ y mKIAA1823 93 MCsLCHCpGaTIGCDvKTCHRTYHYhCALHDKAqirekpsQGIYmVY 139 CprCk<-* C ++k mKIAA1823 140 CRKHK 144 PHD: domain 2 of 2, from 291 to 342: score 23.0, E = 0.042 *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple.......epdg.wy C++C ++g +++C+ k C + yH++C ++ + ++ + + y mKIAA1823 291 KCtLCSQpGaTIGCEiKACVKTYHYhCGVQDKAkyienmsRGIYkLY 337 CprCk<-* C++++ mKIAA1823 338 CKNHS 342 //