hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01602/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1822  ( 636 res)   mph01602

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SR       Scavenger receptor Cys-rich                    172.4    4.5e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SR         1/1     527   630 ..     1   118 []   172.4  4.5e-47

Alignments of top-scoring domains:
SR: domain 1 of 1, from 527 to 630: score 172.4, E = 4.5e-47
                   *->vRLvgGgs..pcEGRVEVyhnGgGqgqWGTVCDdgWdlrdAnVVCRQ
                      vRLv   + +p+ GRVEV+++G    +WGTVCDd Wd ++A VVCRQ
   mKIAA1822   527    VRLVRPAGlsPGRGRVEVFIGG----RWGTVCDDAWDTKAAAVVCRQ 569  

                   LGfggavsasgllpAssayfgpgsg.pIwldnVrCtGtEssLsdCphsgw
                   LGf  av+a +     +a fg+g+  +I+ld+VrC G+E +L +C+h g+
   mKIAA1822   570 LGFAHAVRAAK-----RAEFGEGRAlRILLDDVRCAGSERNLLECAHAGV 614  

                   gvhnttCsHggdRnrseDAGVvCs<-*
                   g hn  C H      +eDAGV Cs   
   mKIAA1822   615 GTHN--CKH------DEDAGVECS    630  

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