hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01602/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1822  ( 636 res)   mph01602

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SRCR     Scavenger receptor cysteine-rich domain        100.5    3.2e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SRCR       1/1     532   630 ..     1   113 []   100.5  3.2e-26

Alignments of top-scoring domains:
SRCR: domain 1 of 1, from 532 to 630: score 100.5, E = 3.2e-26
                   *->vgGssrCeGrVEVrhdgskWgtVCdssWslrdanvdpQaskvCrqLG
                      + G s+  GrVEV+  g++WgtVCd+ W+++ a v      vCrqLG
   mKIAA1822   532    PAGLSPGRGRVEVF-IGGRWGTVCDDAWDTKAAAV------VCRQLG 571  

                   CGgavsll.gpyfsegggPagqreiwldgvnCsGnEtsLsqCpvrvtppg
                   +  av + ++++f+eg++      i ld v C G E  L +C +      
   mKIAA1822   572 FAHAVRAAkRAEFGEGRAL----RILLDDVRCAGSERNLLECAHA---GV 614  

                   lsrqcshdgedagVvCs<-*
                   + ++c h +edagV Cs   
   mKIAA1822   615 GTHNCKH-DEDAGVECS    630  

//