hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10033/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1820  ( 1518 res)   mpm10033

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 35.7    6.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1    1467  1514 ..     1    39 []    35.7  6.4e-06

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 1467 to 1514: score 35.7, E = 6.4e-06
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple...epdg.wyCprC
                       C+ C+++g +++C+ kgC + yH++C++ ++++  e++++ +Cp++
   mKIAA1820  1467    PCtSCHEpGaTISCSyKGCIHTYHYpCANDTGCtfiEENFtLKCPKH 1513 

                   k<-*
                   k   
   mKIAA1820  1514 K    1514 

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