hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia46074/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1814  ( 1565 res)   mia46074

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
DOT1       Histone methylation protein DOT1              88.4    1.5e-22   1
AT_hook    AT hook motif                                 16.4       0.22   1
Extensin_2 Extensin-like region                        -140.0       0.52   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
DOT1         1/1       2   151 ..     1   207 []    88.4  1.5e-22
AT_hook      1/1     241   253 ..     1    13 []    16.4     0.22
Extensin_2   1/1    1171  1556 ..     1   385 []  -140.0     0.52

Alignments of top-scoring domains:
DOT1: domain 1 of 1, from 2 to 151: score 88.4, E = 1.5e-22
                   *->YsrsVsPeaekLkhYkaFSneVYGELlpdflsdvldkvnLtpddvFv
                          V  ++                          + ++ +      
   mKIAA1814     2    ----V-CRPG-------------------------QWCGAGCP---- 14   

                   DLGSGVGnvVlQaAlefgcklSfGcEiMdnaSklAEkqkeefkkrcklfG
                      SG     lQ++l  g           ++S    +            G
   mKIAA1814    15 ---SGCCGHQLQTSLRSGES--------GHPSQVRRDH-----------G 42   

                   kklgkie..fiLrgsFvdnerveeiipeadViLVNNFaFDpeLnlqlkel
                    ++ ++++ ++ rg+F+++e++e+i ++++Vi+VNNFaF+pe+++qlke+
   mKIAA1814    43 PRVQEVDemLE-RGDFLSEEWRERI-ANTSVIFVNNFAFGPEVDHQLKER 90   

                   lqdlKdGcKIISlKsfvplnyrqInfrnledivnilkVeelkllegSVSW
                   ++++K+G++I+S+K+f+pln+r In+rnl+di++i++V el++l+gSVSW
   mKIAA1814    91 FANMKEGGRIVSSKPFAPLNFR-INSRNLSDIGTIMRVVELSPLKGSVSW 139  

                   TsrgveYYisTv<-*
                   T+++v+YY++T+   
   mKIAA1814   140 TGKPVSYYLHTI    151  

AT_hook: domain 1 of 1, from 241 to 253: score 16.4, E = 0.22
                   *->kRkRGRPrKaata<-*
                      +RkRGRP+K ++a   
   mKIAA1814   241    GRKRGRPKKMSAA    253  

Extensin_2: domain 1 of 1, from 1171 to 1556: score -140.0, E = 0.52
                   *->lltlvvalvslslpseasakYsYsSPPPpekpY..............
                       + ++    sls+ps+   + + +  P  +++ +++ ++ +++++ +
   mKIAA1814  1171    GPDVTGLSASLSFPSQRGKDSTTEANPFLSRRQpeglgglkgegnan 1217 

                   ..vYkSPPpPspkyvykSPPPpkkpY...............vYsSPPPPs
                   ++  +S P+  p    k   P   + +++++++ + +++++++ S     
   mKIAA1814  1218 keSGESLPLCGP--SDKASLPHGSRAskgrdreldfkgghnLFISAAAV- 1264 

                   yvykSPPPPkpyvYkSPPpPkyvYkSPPpPvykYkSPPPPthsppPpyvy
                          PP        P    v +S  +  +  + P P   +  P + +
   mKIAA1814  1265 -------PP--GGLLGGPGLVTVASSAGSATPTAQAPRPFLSTFAPGPQF 1305 

                   kSPPPPpk............kyvykSpPpptPvYkYkSPPPPp.......
                      P   + + ++  +++  +  ++ +P  +   +  S      +++++ 
   mKIAA1814  1306 TLGPMSLQanlgsvagssvlQSLFSTVPAAA-GLVHVSSTATRltnshtm 1354 

                   .............yvYkspPpPvkkripy...vYkSPPPPpPYvYkSpPp
                   ++ +++  +++ + v+ ++  P+   +p++ +v +     +     Sp  
   mKIAA1814  1355 gsfssgvaggtvgGVFTHAV-PSASAHPFgagVGSGAVCSSATLGLSPLQ 1403 

                   pvkkyiyksppppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPk
                           s+   +    v   PPPPpP      +            PP+
   mKIAA1814  1404 AA---ASTSASSFQAAASVETRPPPPPP-----LL------------PPQ 1433 

                   ksYkspsppkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPP
                      +   pp      + pPv       PPPP  +              PP
   mKIAA1814  1434 ---HLGRPP------AGPPV----LHAPPPP-NVAL------------PP 1457 

                   PtyvYkSpPpPyk...pptppkiyksPPPPtPvyvYkspPpippiksssp
                   P+    S P P   ++    p    + PP        s+     +++   
   mKIAA1814  1458 PPALLASNPEPVLlqsLASLPANNAFLPPS-------SAAS---LQPANA 1497 

                   pPvyvYkSpPppvysPPPPyvYssPPPPvy...vynsaPvykksPPkhhY
                       +  S P  v s P   v + P P     +   +aP    s P  ++
   mKIAA1814  1498 SLSVKLASLPHKV-SRPSFTVHHQPLPRLAlaqAAPAAPQASTSGPSAVW 1546 

                   iYsSPPPphh<-*
                   +    PPp+    
   mKIAA1814  1547 VSLGMPPPYA    1556 

//