hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02162/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1813  ( 675 res)   mph02162

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Fez1      Fez1                                          403.5     2e-117   1
Vicilin_N Vicilin N terminal region                     -63.1      0.088   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Vicilin_N   1/1     363   496 ..     1   183 []   -63.1    0.088
Fez1        1/1     445   643 ..     1   220 []   403.5   2e-117

Alignments of top-scoring domains:
Vicilin_N: domain 1 of 1, from 363 to 496: score -63.1, E = 0.088
                   *->pGRrnYeDDPqqrYEqCqRRCeset.rGqrEQqqCEeRCkeqykEeq
                       G r+  + P+ r E+C    ++ t+r qr Qq        q+   q
   mKIAA1813   363    FGARQ-RRWPRERGEDCAAQAQQATqRVQRAQQL------LQLQVFQ 402  

                   qqqRqReEDPQrrYeeCqqrCqqeETEeRhrptCqQrCerrYEkeqqqQQ
                    qq +R   +Q   ++  q  q  E       + + rC   +E+eq+   
   mKIAA1813   403 LQQEKR--QLQ---DDFAQLLQERE-------QLERRCAT-FEREQRELG 439  

                   KRYEEQQREDEEKYEERmKEEDNKRDPqqRqyqeCQqRCqqQEQrPrrqQ
                    R EE                          ++ CQ+  +        +Q
   mKIAA1813   440 PRLEE------------------------TKWEVCQKSGEISL----LKQ 461  

                   QCqReCREQYqEqqerGeeenknPQWReeeee.....rsEEG<-*
                   Q      E + E   +G  e+     R +  e + + r  EG   
   mKIAA1813   462 Q----LKESQAELVQKG-SELVA--LRVALREaratlRVSEG    496  

Fez1: domain 1 of 1, from 445 to 643: score 403.5, E = 2e-117
                   *->TkWEVCQKsGEISLLKQQLKESQAEVnQKaSEilaLraqLrdtRAqL
                      TkWEVCQKsGEISLLKQQLKESQAE++QK+SE++aLr++Lr++RA+L
   mKIAA1813   445    TKWEVCQKSGEISLLKQQLKESQAELVQKGSELVALRVALREARATL 491  

                   rekEerllgLrdAlrtKeLELEvCEgELqRklqEaaltPvDLvElrEkvg
                   r++E+r++gL++A+r++e ELE+C++ELqR +qEa+        lrEk+g
   mKIAA1813   492 RVSEGRARGLQEAARAREQELEACSQELQRYRQEAER-------LREKAG 534  

                   slEadeaklReqadaaaaadvRmRqDAqGrPelllesdeAkvdqeGeGgt
                    l+a++ +lR +++++a+ d          P+ll+esdeAkv+++++G +
   mKIAA1813   535 HLDAEASGLRDPPVPPATTD----------PFLLAESDEAKVQRAAAGAG 574  

                   eAqlreLRrelERLRAELreERqrrerQalsFeqERlvWqeEKEkVirYQ
                   ++    LR+++ERLR EL++E +r+++Q++sFe+ERl+Wq+EKE+VirYQ
   mKIAA1813   575 GS----LRAQVERLRQELQREQRRGDEQRDSFEGERLAWQAEKEQVIRYQ 620  

                   kQLQlSYveMYqRNQaLEkeLqq<-*
                   kQLQ++Y++MY+RN++LE+eLqq   
   mKIAA1813   621 KQLQHNYIQMYRRNRQLEQELQQ    643  

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