hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02539/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1810  ( 568 res)   mbh02539

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
zf-C3HC4   Zinc finger, C3HC4 type (RING finger)         47.0    4.1e-10   1
Extensin_2 Extensin-like region                        -133.6       0.29   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
zf-C3HC4     1/1     283   321 ..     1    50 []    47.0  4.1e-10
Extensin_2   1/1     281   564 ..     1   385 []  -133.6     0.29

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 283 to 321: score 47.0, E = 4.1e-10
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C IC+ee+ +        lpC+H      f+ sCl++w++  +++tC
   mKIAA1810   283    CIICREEMVTGA----KRLPCNHI-----FHTSCLRSWFQ--RQQTC 318  

                   plC<-*
                   p C   
   mKIAA1810   319 PTC    321  

Extensin_2: domain 1 of 1, from 281 to 564: score -133.6, E = 0.29
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                       + ++    +++ +    ++  +      +  +  +   p     v 
   mKIAA1810   281    NVCIICREEMVTGAKRLPCNHIFHTSCLRS-WFQRQQTCPTCRMDVL 326  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv
                   +   P+      +SPPPP +  + PPP         P P++    PP  +
   mKIAA1810   327 RASLPA------QSPPPPEPADQGPPPA--------PHPQPLLPQPPNCK 362  

                   ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPPPp
                   + +  P PP   p  p++   PP P        pPp +        PPP 
   mKIAA1810   363 WPFICPFPPGMFPLWPPMGPFPPVP--------PPPSS---GEAAAPPPT 401  

                   yvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiyksppppeph
                       s P       +    S   P P    S P p         p+p   
   mKIAA1810   402 STAVSRPSGAAT-TTAAGTSTSAPAP---GSVPGPE------AGPAPGF- 440  

                   kYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyVYkSp
                         P PPp   +  +p           PPP             +  p
   mKIAA1810   441 ------PFPPP---WMGMP----------LPPP-------------FAFP 458  

                   PpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpPykppt
                   P Pv+p  +    P +       ++              +S     ++  
   mKIAA1810   459 PMPVPPAGFAGLTPEELRALEGHERQHL-------EARLQSLRN-IHTLL 500  

                   ppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpPppvysPPPP
                    + + +     t v     pP+  p  ++s  P     S           
   mKIAA1810   501 DAAMLQINQYLT-VLASLGPPR--P--ATSVNPTEETASTVV-------- 537  

                   yvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-*
                       s  P +    saP    + P +    +SPP p     
   mKIAA1810   538 ----SAAPST----SAPSSEAPTPSPG---ASPPIPEA    564  

//