hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10336/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1807  ( 850 res)   mpm10336

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 87.3    1.9e-21   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/2     222   268 ..     1    39 []    49.9  3.3e-10
PHD        2/2     331   386 ..     1    39 []    43.8  2.3e-08

Alignments of top-scoring domains:
PHD: domain 1 of 2, from 222 to 268: score 49.9, E = 3.3e-10
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr
                      +C+vC+++++++++++++Cd +C+ ++H+ C+g+ +  p+g+w+C  
   mKIAA1807   222    VCdVCQSpdgedgNeMVFCD-KCNICVHQaCYGILKV-PEGsWLCRT 266  

                   Ck<-*
                   C    
   mKIAA1807   267 CA    268  

PHD: domain 2 of 2, from 331 to 386: score 43.8, E = 2.3e-08
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..........epd
                      +C++C+++ g  +qC+ k+C++++Hv+C+   +++ ++   +++e++
   mKIAA1807   331    VCsLCNEkfGaSIQCSvKNCRTAFHVtCAFDRGLemktilaendEVK 377  

                   g.wyCprCk<-*
                   ++ yCp+++   
   mKIAA1807   378 FkSYCPKHS    386  

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