hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10336/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1807  ( 850 res)   mpm10336

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD-finger                                      59.9    5.3e-14   2
C1_1     Phorbol esters/diacylglycerol binding domain     1.4       0.19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_1       1/1     205   262 ..     1    55 []     1.4     0.19
PHD        1/2     222   270 ..     1    51 []    63.3  5.3e-15
PHD        2/2     331   388 ..     1    51 []     2.3     0.17

Alignments of top-scoring domains:
C1_1: domain 1 of 1, from 205 to 262: score 1.4, E = 0.19
                   *->HhFvhrw....nfkqptfCdhCgellwgslgkqGlkCswCklnvHkr
                      H ++   + +  ++  + Cd+C+++  g  g  ++ C+ C+ +vH+ 
   mKIAA1807   205    HAIETEEglgiEYDEDVVCDVCQSPD-GEDGNEMVFCDKCNICVHQA 250  

                   ChekVppeCgcg<-*
                   C+  ++  +g +   
   mKIAA1807   251 CYGILKVPEGSW    262  

PHD: domain 1 of 2, from 222 to 270: score 63.3, E = 5.3e-15
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                       C vC++pd+++g+++++CD+C+ ++H+aC+g+     peg WlC+ 
   mKIAA1807   222    VCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKV--PEGSWLCRT 266  

                   Ctpk<-*
                   C  +   
   mKIAA1807   267 CALG    270  

PHD: domain 2 of 2, from 331 to 388: score 2.3, E = 0.17
                   *->yCsvCgkpdddaggdllqCD..gCdrwfHlaCl...gpple......
                       Cs+C++   +  g  +qC  ++C  +fH  C  ++g+++++   ++
   mKIAA1807   331    VCSLCNE---K-FGASIQCSvkNCRTAFHVTCAfdrGLEMKtilaen 373  

                   eppegkWlCpeCtpk<-*
                   ++ ++k +Cp+   +   
   mKIAA1807   374 DEVKFKSYCPKHSSH    388  

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