hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej00823/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1805  ( 591 res)   mej00823

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     58.4    9.5e-13   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/4     229   252 ..     1    23 []    18.7     0.84
ZnF_C2H2   2/4     319   342 ..     1    23 []    25.4   0.0078
ZnF_C2H2   3/4     437   459 ..     1    23 []     4.0  1.1e+02
ZnF_C2H2   4/4     471   494 ..     1    23 []    22.2    0.071

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 4, from 229 to 252: score 18.7, E = 0.84
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ Cgk+ +s   +k H++  H   
   mKIAA1805   229    FTCHH-CGKQLHSLaGMKYHVMaNH    252  

ZnF_C2H2: domain 2 of 4, from 319 to 342: score 25.4, E = 0.0078
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ Cgk ++sk  L  Hmr+ H   
   mKIAA1805   319    LKCHH-CGKPYRSKaGLAYHMRsEH    342  

ZnF_C2H2: domain 3 of 4, from 437 to 459: score 4.0, E = 1.1e+02
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                       +Cp +gC  ++ss + Lk H+      
   mKIAA1805   437    IQCPNqGCEAVYSSVsGLKAHLG--    459  

ZnF_C2H2: domain 4 of 4, from 471 to 494: score 22.2, E = 0.071
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC + C k f s++  k H+ +vH   
   mKIAA1805   471    YKCLL-CEKEFVSEsGVKYHINsVH    494  

//