hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej00823/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1805  ( 591 res)   mej00823

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          60.5    3.7e-14   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/6     201   224 ..     1    24 []     1.9       64
zf-C2H2    2/6     229   252 ..     1    24 []    14.7      2.2
zf-C2H2    3/6     283   307 ..     1    24 []     6.7       22
zf-C2H2    4/6     319   342 ..     1    24 []    27.5   0.0003
zf-C2H2    5/6     437   461 ..     1    24 []    11.7      7.4
zf-C2H2    6/6     471   494 ..     1    24 []    21.1    0.026

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 6, from 201 to 224: score 1.9, E = 64
                   *->ykCpfdCgksFsrk.snLkrHlrtH<-*
                       +Cp  C+ + +   + Lk+H+  +   
   mKIAA1805   201    VSCP-TCQAVGRKTiEGLKKHMENC    224  

zf-C2H2: domain 2 of 6, from 229 to 252: score 14.7, E = 2.2
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+ +Cgk   + + +k H + +H   
   mKIAA1805   229    FTCH-HCGKQLHSLAGMKYHVMAnH    252  

zf-C2H2: domain 3 of 6, from 283 to 307: score 6.7, E = 22
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                       +C  + C  +F++   +  H r++   
   mKIAA1805   283    LRCMReSCSSTFTSIMGYLYHVRKC    307  

zf-C2H2: domain 4 of 6, from 319 to 342: score 27.5, E = 0.0003
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       kC+ +Cgk +++k+ L  H+r++H   
   mKIAA1805   319    LKCH-HCGKPYRSKAGLAYHMRSeH    342  

zf-C2H2: domain 5 of 6, from 437 to 461: score 11.7, E = 7.4
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                       +Cp ++C  ++s+ s Lk+Hl ++   
   mKIAA1805   437    IQCPNqGCEAVYSSVSGLKAHLGSC    461  

zf-C2H2: domain 6 of 6, from 471 to 494: score 21.1, E = 0.026
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC   C k F + s  k H+++ H   
   mKIAA1805   471    YKCL-LCEKEFVSESGVKYHINSvH    494  

//