hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/meh/meh03138/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1804  ( 807 res)   meh03138

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TyrKc    Tyrosine kinase, catalytic domain              287.8    8.3e-82   1
S_TKc    Serine/Threonine protein kinases, catalytic    201.4      8e-56   1
SH3      Src homology 3 domains                          77.3    1.9e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3        1/1      43   103 ..     1    58 []    77.3  1.9e-18
TyrKc      1/1     126   398 ..     1   280 []   287.8  8.3e-82
S_TKc      1/1     126   405 ..     1   231 []   201.4    8e-56

Alignments of top-scoring domains:
SH3: domain 1 of 1, from 43 to 103: score 77.3, E = 1.9e-18
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.....ddgWweGelnr
                      ++  AlYDyea++edELs+++G+ ++vl+++   ++d+gWw G+++ 
   mKIAA1804    43    GMWAALYDYEARGEDELSLRRGQLVEVLSQDaavsgDEGWWAGQVQ- 88   

                   tGkeGlfPsnYVeeie<-*
                     + G+fP++YV+++    
   mKIAA1804    89 -RRLGIFPASYVAPCG    103  

TyrKc: domain 1 of 1, from 126 to 398: score 287.8, E = 8.3e-82
                   *->ltlgkkLGeGaFGeVykGtlk.ieVAVKtLkeda.......keeFlr
                      l+l++ +G G FG+Vy++t+ ++eVAVK  + d +++     e  +r
   mKIAA1804   126    LELKELIGAGGFGQVYRATWQgQEVAVKAARRDPeqdaaaaAESVRR 172  

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   Ea++  +l  +HpNi++L Gvc+ +       + l++v+E++ gG+L+  
   mKIAA1804   173 EARLFAML--RHPNIIQLRGVCLRQ-------PHLCLVLEFARGGALNRA 213  

                   Lrknrpk...........lslsdLlsfAlQIAkGMeYLesk...nfvHRD
                   L +   +++ +++++ ++++++ L+++A+QIA+GM YL++    ++ HRD
   mKIAA1804   214 LAAAASDprapgprrarrIPPQVLVNWAVQIARGMLYLHEEavvPILHRD 263  

                   LAARNcLvgenk........vvKIsDFGLsRdlyddDkkGeskdyYrkkg
                   L   N+L+ e+ ++++  +++ KI+DFGL+R+++            r+  
   mKIAA1804   264 LKSSNILLLEKIehddicnkTLKITDFGLAREWHRT---------TRM-- 302  

                   gkggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpge
                     ++     + WmAPE+++ + F+  SD+WS+GVlLWE++t Ge PY g+
   mKIAA1804   303 --SAA--GTYAWMAPEVIRSSLFSKGSDIWSYGVLLWELLT-GEVPYRGI 347  

                   iqqfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedP
                          + ++    +   lp+P          CP+   +lM++CW+ dP
   mKIAA1804   348 ----DGLAVAYGVAVNKLTLPIPST--------CPEPFAKLMKECWEQDP 385  

                   edRPtFselverl<-*
                   + RP+F+ + ++l   
   mKIAA1804   386 HIRPSFALILQQL    398  

S_TKc: domain 1 of 1, from 126 to 405: score 201.4, E = 8e-56
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik...........eri
                       el +++G G+FG+Vy+a++ +  ++vA+K  +++++++     e++
   mKIAA1804   126    LELKELIGAGGFGQVYRATWQG--QEVAVKAARrdpeqdaaaaaESV 170  

                   lrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdll....
                   +rE ++  + +HPNI++L +v+  + +l+lV+E++ G  G L + l    
   mKIAA1804   171 RREARLFAMlRHPNIIQLRGVCLRqPHLCLVLEFARG--GALNRALaaaa 218  

                   ........kkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIi...HR
                   ++++ +++++ +r      +++++   ++ Qi++++ YLH+  +++  HR
   mKIAA1804   219 sdprapgpRRARR------IPPqVLVNWAVQIARGMLYLHEEAVVpilHR 262  

                   DLKPeNiLLds..........hvKlaDFGlArql.....ttfvGTpeYmA
                   DLK +NiLL ++ ++++  ++++K++DFGlAr+ +++++++  GT  +mA
   mKIAA1804   263 DLKSSNILLLEkiehddicnkTLKITDFGLAREWhrttrMSAAGTYAWMA 312  

                   PEvl...gYgkpavDiWSlGcilyElltGkpPFp...qldlifkkig...
                   PEv++++ ++k  +DiWS G++l+ElltG+ P+++ + l++ + + +++ 
   mKIAA1804   313 PEVIrssLFSK-GSDIWSYGVLLWELLTGEVPYRgidGLAVAYGVAVnkl 361  

                   ........SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   + + +++ ++++  L+k +++ dP  R++   +L+  ++ ++ + +   
   mKIAA1804   362 tlpipstcPEPFAKLMKECWEQDPHIRPSFaLILQ--QLTAIEEAV    405  

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