hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj24209/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1803  ( 705 res)   mfj24209

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    148.0    9.9e-40  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/12     45    69 ..     1    23 []     7.4       46
ZnF_C2H2   2/12     91   113 ..     1    23 []    20.4     0.25
ZnF_C2H2   3/12    167   189 ..     1    23 []    16.7      3.3
ZnF_C2H2   4/12    224   246 ..     1    23 []    21.8    0.095
ZnF_C2H2   5/12    253   276 ..     1    23 []    18.3      1.1
ZnF_C2H2   6/12    282   305 ..     1    23 []    24.8    0.012
ZnF_C2H2   7/12    390   413 ..     1    23 []    17.7      1.6
ZnF_C2H2   8/12    419   442 ..     1    23 []    14.0      8.2
ZnF_C2H2   9/12    453   475 ..     1    23 []    18.0      1.3
ZnF_C2H2  10/12    499   521 ..     1    23 []    23.6    0.028
ZnF_C2H2  11/12    527   550 ..     1    23 []    19.6     0.44
ZnF_C2H2  12/12    613   635 ..     1    23 []    22.8    0.048

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 12, from 45 to 69: score 7.4, E = 46
                   *->ykCpigCg.ksfssk.aLkrHmr.vH<-*
                      ++C + C + sfs+++ L  H+ + H   
   mKIAA1803    45    FRCIK-CFkLSFSTAeLLCMHYTdHH    69   

ZnF_C2H2: domain 2 of 12, from 91 to 113: score 20.4, E = 0.25
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+ +  s  +L+ H+ +H   
   mKIAA1803    91    FQCKH-CDSKLQSIaELTSHLNIH    113  

ZnF_C2H2: domain 3 of 12, from 167 to 189: score 16.7, E = 3.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C ++ ++ +a  +H+r+H   
   mKIAA1803   167    YKCKF-CVEVHPTLrAICNHLRKH    189  

ZnF_C2H2: domain 4 of 12, from 224 to 246: score 21.8, E = 0.095
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C+++   +++L rHm++H   
   mKIAA1803   224    YSCQY-CSFVSAFRhNLDRHMQTH    246  

ZnF_C2H2: domain 5 of 12, from 253 to 276: score 18.3, E = 1.1
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C+++ s  + Lk H+ + H   
   mKIAA1803   253    FRCKL-CSFKSSYNsRLKTHILkAH    276  

ZnF_C2H2: domain 6 of 12, from 282 to 305: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC++ C++s+ + ++Lk+H  +vH   
   mKIAA1803   282    YKCSW-CSFSTMTIsQLKEHSLkVH    305  

ZnF_C2H2: domain 7 of 12, from 390 to 413: score 17.7, E = 1.6
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C +s    ++ +rH+r++H   
   mKIAA1803   390    LHCEF-CEFSSGYIqSIRRHYRdKH    413  

ZnF_C2H2: domain 8 of 12, from 419 to 442: score 14.0, E = 8.2
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC+  C++ +  k+a++ H+   H   
   mKIAA1803   419    FKCKD-CSFYTGFKsAFTMHVEaGH    442  

ZnF_C2H2: domain 9 of 12, from 453 to 475: score 18.0, E = 1.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C ++++ k++++ H+  H   
   mKIAA1803   453    LRCPL-CLYHTKYKrNMIDHIVLH    475  

ZnF_C2H2: domain 10 of 12, from 499 to 521: score 23.6, E = 0.028
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C +++ss ++L++H+ +H   
   mKIAA1803   499    FRCDK-CTFTCSSDeSLQQHIEKH    521  

	[output cut off at A = 10 top alignments]
//