hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file: /cdna4/rodent/full/goal/mfj/mfj24209/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: mKIAA1803 ( 705 res) mfj24209
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C2H2 Zinc finger, C2H2 type 100.8 2.7e-26 12
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C2H2 1/12 45 68 .. 1 24 [] 4.1 40
zf-C2H2 2/12 91 113 .. 1 24 [] 16.8 0.5
zf-C2H2 3/12 167 189 .. 1 24 [] 7.7 18
zf-C2H2 4/12 224 246 .. 1 24 [] 21.1 0.027
zf-C2H2 5/12 253 276 .. 1 24 [] 17.6 0.29
zf-C2H2 6/12 282 305 .. 1 24 [] 15.2 1.6
zf-C2H2 7/12 390 413 .. 1 24 [] 3.6 44
zf-C2H2 8/12 419 442 .. 1 24 [] 15.2 1.6
zf-C2H2 9/12 453 475 .. 1 24 [] 12.8 5.7
zf-C2H2 10/12 499 521 .. 1 24 [] 20.1 0.052
zf-C2H2 11/12 527 550 .. 1 24 [] 16.8 0.52
zf-C2H2 12/12 613 635 .. 1 24 [] 27.4 0.00034
Alignments of top-scoring domains:
zf-C2H2: domain 1 of 12, from 45 to 68: score 4.1, E = 40
*->ykCpfdCg.ksFsrksnLkrHlrtH<-*
++C +C + sFs+ + L +H H
mKIAA1803 45 FRCI-KCFkLSFSTAELLCMHYTDH 68
zf-C2H2: domain 2 of 12, from 91 to 113: score 16.8, E = 0.5
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C+ +C+ + + ++L++Hl++H
mKIAA1803 91 FQCK-HCDSKLQSIAELTSHLNIH 113
zf-C2H2: domain 3 of 12, from 167 to 189: score 7.7, E = 18
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ C ++ + +Hlr+H
mKIAA1803 167 YKCK-FCVEVHPTLRAICNHLRKH 189
zf-C2H2: domain 4 of 12, from 224 to 246: score 21.1, E = 0.027
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +C + ++nL rH++tH
mKIAA1803 224 YSCQ-YCSFVSAFRHNLDRHMQTH 246
zf-C2H2: domain 5 of 12, from 253 to 276: score 17.6, E = 0.29
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
++C+ C + s +s Lk+H+ + H
mKIAA1803 253 FRCK-LCSFKSSYNSRLKTHILKaH 276
zf-C2H2: domain 6 of 12, from 282 to 305: score 15.2, E = 1.6
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
ykC+ C s + s+Lk H + H
mKIAA1803 282 YKCS-WCSFSTMTISQLKEHSLKvH 305
zf-C2H2: domain 7 of 12, from 390 to 413: score 3.6, E = 44
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
C+ C s + +rH r +H
mKIAA1803 390 LHCE-FCEFSSGYIQSIRRHYRDkH 413
zf-C2H2: domain 8 of 12, from 419 to 442: score 15.2, E = 1.6
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+kC+ dC ks +++H +H
mKIAA1803 419 FKCK-DCSFYTGFKSAFTMHVEAgH 442
zf-C2H2: domain 9 of 12, from 453 to 475: score 12.8, E = 5.7
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+Cp C + + k n+ H+ H
mKIAA1803 453 LRCP-LCLYHTKYKRNMIDHIVLH 475
zf-C2H2: domain 10 of 12, from 499 to 521: score 20.1, E = 0.052
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C+ +C ++s+ ++L++H+ +H
mKIAA1803 499 FRCD-KCTFTCSSDESLQQHIEKH 521
zf-C2H2: domain 11 of 12, from 527 to 550: score 16.8, E = 0.52
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
ykC+ C + ++ ++L +Hlr +H
mKIAA1803 527 YKCQ-LCYYETKHTEELDTHLRDeH 550
zf-C2H2: domain 12 of 12, from 613 to 635: score 27.4, E = 0.00034
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+ C+ Cg++Fs+ s+ +rH +H
mKIAA1803 613 FPCE-FCGRAFSQGSEWERHVLRH 635
//