hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj24209/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1803  ( 705 res)   mfj24209

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         100.8    2.7e-26  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/12     45    68 ..     1    24 []     4.1       40
zf-C2H2    2/12     91   113 ..     1    24 []    16.8      0.5
zf-C2H2    3/12    167   189 ..     1    24 []     7.7       18
zf-C2H2    4/12    224   246 ..     1    24 []    21.1    0.027
zf-C2H2    5/12    253   276 ..     1    24 []    17.6     0.29
zf-C2H2    6/12    282   305 ..     1    24 []    15.2      1.6
zf-C2H2    7/12    390   413 ..     1    24 []     3.6       44
zf-C2H2    8/12    419   442 ..     1    24 []    15.2      1.6
zf-C2H2    9/12    453   475 ..     1    24 []    12.8      5.7
zf-C2H2   10/12    499   521 ..     1    24 []    20.1    0.052
zf-C2H2   11/12    527   550 ..     1    24 []    16.8     0.52
zf-C2H2   12/12    613   635 ..     1    24 []    27.4  0.00034

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 12, from 45 to 68: score 4.1, E = 40
                   *->ykCpfdCg.ksFsrksnLkrHlrtH<-*
                      ++C  +C + sFs+ + L +H   H   
   mKIAA1803    45    FRCI-KCFkLSFSTAELLCMHYTDH    68   

zf-C2H2: domain 2 of 12, from 91 to 113: score 16.8, E = 0.5
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+ +  + ++L++Hl++H   
   mKIAA1803    91    FQCK-HCDSKLQSIAELTSHLNIH    113  

zf-C2H2: domain 3 of 12, from 167 to 189: score 7.7, E = 18
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C ++  +     +Hlr+H   
   mKIAA1803   167    YKCK-FCVEVHPTLRAICNHLRKH    189  

zf-C2H2: domain 4 of 12, from 224 to 246: score 21.1, E = 0.027
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C  +   ++nL rH++tH   
   mKIAA1803   224    YSCQ-YCSFVSAFRHNLDRHMQTH    246  

zf-C2H2: domain 5 of 12, from 253 to 276: score 17.6, E = 0.29
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+  C  + s +s Lk+H+ + H   
   mKIAA1803   253    FRCK-LCSFKSSYNSRLKTHILKaH    276  

zf-C2H2: domain 6 of 12, from 282 to 305: score 15.2, E = 1.6
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+  C  s  + s+Lk H  + H   
   mKIAA1803   282    YKCS-WCSFSTMTISQLKEHSLKvH    305  

zf-C2H2: domain 7 of 12, from 390 to 413: score 3.6, E = 44
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                        C+  C  s     + +rH r +H   
   mKIAA1803   390    LHCE-FCEFSSGYIQSIRRHYRDkH    413  

zf-C2H2: domain 8 of 12, from 419 to 442: score 15.2, E = 1.6
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC+ dC      ks +++H   +H   
   mKIAA1803   419    FKCK-DCSFYTGFKSAFTMHVEAgH    442  

zf-C2H2: domain 9 of 12, from 453 to 475: score 12.8, E = 5.7
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp  C +  + k n+  H+  H   
   mKIAA1803   453    LRCP-LCLYHTKYKRNMIDHIVLH    475  

zf-C2H2: domain 10 of 12, from 499 to 521: score 20.1, E = 0.052
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C  ++s+ ++L++H+ +H   
   mKIAA1803   499    FRCD-KCTFTCSSDESLQQHIEKH    521  

zf-C2H2: domain 11 of 12, from 527 to 550: score 16.8, E = 0.52
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+  C +  ++ ++L +Hlr +H   
   mKIAA1803   527    YKCQ-LCYYETKHTEELDTHLRDeH    550  

zf-C2H2: domain 12 of 12, from 613 to 635: score 27.4, E = 0.00034
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  Cg++Fs+ s+ +rH  +H   
   mKIAA1803   613    FPCE-FCGRAFSQGSEWERHVLRH    635  

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