hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02246/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1802  ( 804 res)   mpj02246

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     41.3    1.3e-07   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/5      16    39 ..     1    23 []    16.6      3.5
ZnF_C2H2   2/5      64    87 ..     1    23 []     8.5       34
ZnF_C2H2   3/5     701   724 ..     1    23 []     7.9       40
ZnF_C2H2   4/5     730   752 ..     1    23 []    23.1     0.04
ZnF_C2H2   5/5     757   778 ..     1    23 []     8.7       33

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 5, from 16 to 39: score 16.6, E = 3.5
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C+++ +++++ + Hm ++H   
   mKIAA1802    16    LECGH-CSFRGTDYeNVQLHMGsIH    39   

ZnF_C2H2: domain 2 of 5, from 64 to 87: score 8.5, E = 34
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C ++ + + +   H+  +H   
   mKIAA1802    64    FHCHK-CFFTSKLYaNVYYHITaRH    87   

ZnF_C2H2: domain 3 of 5, from 701 to 724: score 7.9, E = 40
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C+i C  +   k+a  +H+ ++H   
   mKIAA1802   701    YYCKI-CCCRAMKKgAVLHHLVnKH    724  

ZnF_C2H2: domain 4 of 5, from 730 to 752: score 23.1, E = 0.04
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+i Cgk f  ++ Lk+H+  H   
   mKIAA1802   730    YKCTI-CGKAFLLEsLLKNHVAAH    752  

ZnF_C2H2: domain 5 of 5, from 757 to 778: score 8.7, E = 33
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp  C++  + ++ +k+H+  H   
   mKIAA1802   757    LKCPR-CNFESNFPrGFKKHLT-H    778  

//