hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02246/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1802  ( 804 res)   mpj02246

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          21.9      0.015   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/5      16    39 ..     1    24 []     8.7       14
zf-C2H2    2/5      64    87 ..     1    24 []     4.4       37
zf-C2H2    3/5     701   724 ..     1    24 []    -0.6  1.1e+02
zf-C2H2    4/5     730   752 ..     1    24 []    26.7  0.00054
zf-C2H2    5/5     757   779 ..     1    24 []     7.7       18

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 5, from 16 to 39: score 8.7, E = 14
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C  +C  + ++ +n + H+ + H   
   mKIAA1802    16    LECG-HCSFRGTDYENVQLHMGSiH    39   

zf-C2H2: domain 2 of 5, from 64 to 87: score 4.4, E = 37
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+ +C  + +  +n   H+  +H   
   mKIAA1802    64    FHCH-KCFFTSKLYANVYYHITArH    87   

zf-C2H2: domain 3 of 5, from 701 to 724: score -0.6, E = 1.1e+02
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+ +C  +   k+   +Hl  +H   
   mKIAA1802   701    YYCK-ICCCRAMKKGAVLHHLVNkH    724  

zf-C2H2: domain 4 of 5, from 730 to 752: score 26.7, E = 0.00054
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F   s Lk+H   H   
   mKIAA1802   730    YKCT-ICGKAFLLESLLKNHVAAH    752  

zf-C2H2: domain 5 of 5, from 757 to 779: score 7.7, E = 18
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       kCp  C+   + +  +k+Hl  +   
   mKIAA1802   757    LKCP-RCNFESNFPRGFKKHLTHC    779  

//