hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbr/mbr27022/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1800 ( 493 res) mbr27022 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FAST_Leu-rich FAST kinase leucine-rich 222.0 8.5e-63 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FAST_Leu-rich 1/1 223 394 .. 1 184 [] 222.0 8.5e-63 Alignments of top-scoring domains: FAST_Leu-rich: domain 1 of 1, from 223 to 394: score 222.0, E = 8.5e-63 *->iakiLlpFgrLNYvyKPpnaeeflskleevLtrelhtlsqYPeslvd + +i+lpF+ LNY+ Pp+++ef++++++ +++l+tl+ P lv+ mKIAA1800 223 VLAIILPFSILNYD--PPQKDEFFGACVQCCNSYLGTLD--PGTLVF 265 lvwSLclleyfPealLnqvlspgFiqrllgsksvlyaskdarvlqkLlqL l++SL++leyfPe+lL++ ++++F++rl+++ ++l s++ar +++L++L mKIAA1800 266 LGFSLAVLEYFPEDLLKKMFNIEFLARLDSQLEILPSSLSARIQFRLMEL 315 nttvkLEcPeYkgPlLptryqvpsflqpliklrepldlsskkevaetLFL n++v+LEcPe ++P++++r+++ +f + ++ + + ++++ ++ mKIAA1800 316 NRAVCLECPELQVPWFHDRFCQRQF-NKDTGVMNGA----QQQIYKM--- 357 LkqLLGgenkfslnVltPygyviDfEihlDangnpLP<-* L+++LGg ++++++ l Py++++ fE++lD++++pLP mKIAA1800 358 LAEVLGGHQCVKPSALSPYYHTVGFECILDKRKKPLP 394 //