hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09365/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1798  ( 761 res)   mpm09365

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            59.6    4.1e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1     686   753 ..     1    67 []    59.6  4.1e-13

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 686 to 753: score 59.6, E = 4.1e-13
                   *->vs.wspesVaeWLesigleq.YadnFrkngidgeelllltseedLke
                      vs+ws ++V+e+++s+  ++++ + F++++idge++ll+t + d+ +
   mKIAA1798   686    VSkWSTDEVSEFIQSLPGCEeHGKVFKDEQIDGEAFLLMT-QTDIVK 731  

                   lGitllGhRkkIlsaiqklkeq<-*
                   ++  +lG+ +kI+++i  +k+    
   mKIAA1798   732 IMSIKLGPALKIFNSILMFKAA    753  

//