hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm09365/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1798 ( 761 res) mpm09365 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MBT mbt repeat 396.7 2.3e-115 3 SAM_1 SAM domain (Sterile alpha motif) 53.5 4.7e-12 1 SAM_2 SAM domain (Sterile alpha motif) 27.0 0.00045 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MBT 1/3 146 219 .. 1 77 [] 147.0 3.3e-40 MBT 2/3 253 326 .. 1 77 [] 123.3 4.6e-33 MBT 3/3 357 430 .. 1 77 [] 138.7 1.1e-37 SAM_1 1/1 687 751 .. 1 66 [] 53.5 4.7e-12 SAM_2 1/1 686 753 .. 1 72 [] 27.0 0.00045 Alignments of top-scoring domains: MBT: domain 1 of 3, from 146 to 219: score 147.0, E = 3.3e-40 *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv MKLE vDp++ ++cv TV+ev+Gyr ++L+fDG++++y DfW+++ mKIAA1798 146 MKLEGVDPDHQAMYCVLTVAEVCGYR-IKLHFDGYSDCY--DFWVNA 189 dSpdIhPvGWCeknghpLqPPpgyrskkfs<-* d dIhPvGWCek+gh+L PP+gy++++f mKIAA1798 190 DALDIHPVGWCEKTGHKLRPPKGYKEEEFN 219 MBT: domain 2 of 3, from 253 to 326: score 123.3, E = 4.6e-33 *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv MKLEA+D++ ps icvATV+++++ r ++++fD wd+ y D+Wc+ mKIAA1798 253 MKLEAADKKSPSVICVATVTDMVDNR-FLVHFDNWDESY--DYWCES 296 dSpdIhPvGWCeknghpLqPPpgyrskkfs<-* +Sp IhPvGWC ++ ++L +Ppgy + k mKIAA1798 297 NSPHIHPVGWCKEHRRTLITPPGYSHVKHF 326 MBT: domain 3 of 3, from 357 to 430: score 138.7, E = 1.1e-37 *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv MKLEAvD++np +i+vATV+++ + r ++++fDGw+s+y D+W ++ mKIAA1798 357 MKLEAVDKRNPLFIRVATVADTDDHR-IKVHFDGWSSCY--DYWIDA 400 dSpdIhPvGWCeknghpLqPPpgyrskkfs<-* dSpdIhPvGWC+k+ghpLq+P+ ++ + mKIAA1798 401 DSPDIHPVGWCSKTGHPLQAPLSPAELMEP 430 SAM_1: domain 1 of 1, from 687 to 751: score 53.5, E = 4.7e-12 *->dgwsvesVgeWLesigl..lgqYidnFlaagyidgdtllqlteeDLe + ws + V+e+++ l++++++ + F + + idg+++l++t+ D++ mKIAA1798 687 SKWSTDEVSEFIQ--SLpgCEEHGKVF-KDEQIDGEAFLLMTQTDIV 730 dlGvtllGHrkkIlssIqgLk<-* +++ ++lG+++kI +sI ++k mKIAA1798 731 KIMSIKLGPALKIFNSILMFK 751 SAM_2: domain 1 of 1, from 686 to 753: score 27.0, E = 0.00045 *->veswslesvaeWLesi.glegqYkdnFsdqgitglellllrlteedL v+ ws+++v+e+ +s++g+ +++ F+d +i+g e+ l +t+ d mKIAA1798 686 VSKWSTDEVSEFIQSLpGC-EEHGKVFKDEQIDG-EAF-LLMTQTDI 729 aklalGitsvghRkkilskiqelkqq<-* ++ ++g+ +ki ++i +k mKIAA1798 730 -V-KIMSIKLGPALKIFNSILMFKAA 753 //