hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08259/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1791  ( 1452 res)   mpm08259

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       333.6    2.3e-96   1
Pkinase_Tyr Protein tyrosine kinase                      58.6    1.6e-15   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase_Tyr   1/1     706   965 ..     1   272 []    58.6  1.6e-15
Pkinase       1/1     706   999 ..     1   287 []   333.6  2.3e-96

Alignments of top-scoring domains:
Pkinase_Tyr: domain 1 of 1, from 706 to 965: score 58.6, E = 1.6e-15
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLk.....eigas
                      + ++  +GeG +G Vyk++ k    +t+  VA K+++ ++++e g  
   mKIAA1791   706    FDIIGIIGEGTYGQVYKARDK----DTGEMVALKKVRldnekE-GFP 747  

                   seeieredFlrEAsiMkklGdHpNiVrLlGvct.........kegePggp
                     +      +rE++i+++l  H+ i+++  ++t++++  + +k+++    
   mKIAA1791   748 ITA------IREIKILRQL-THQSIINMKEIVTdkedaldfkKDKGA--- 787  

                   glyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLeskn
                     y+V+Eym + dL   L +     +++  +  sf++Q  +G++Y + kn
   mKIAA1791   788 -FYLVFEYMDH-DLMGLLESG--LVHFNENHIKSFMRQLMEGLDYCHKKN 833  

                   fvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm
                   f HRD+ + N+L+++ +++K +DFGLaR+ y+ ++  r  ++  +     
   mKIAA1791   834 FLHRDIKCSNILLNNRGQIKLADFGLARL-YSSEES-RPYTNKVITLWYR 881  

                   APEslkygk.FtskSDVWSFGVlLWEiftlGeqP.FYpgmsneevlelly
                   +PE l   +++t + DVWS G+ L E+ft  ++P F ++   ++ lel+ 
   mKIAA1791   882 PPELLLGEErYTPAIDVWSCGCILGELFT--KKPiFQANQELAQ-LELI- 927  

                   edGyRLprPenCPdelYdlMlqCWaedPedRPtFselverL<-*
                    +    p+P   Pd +       ++ + + R   + l+e++   
   mKIAA1791   928 SRICGSPCPAVWPDVIKLPYFNTMKPKKQYR---RKLREEF    965  

Pkinase: domain 1 of 1, from 706 to 999: score 333.6, E = 2.3e-96
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      + +++++G+G++G+Vyka++k+tg++VA+K++++++ek+++++ta+r
   mKIAA1791   706    FDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIR 752  

                   rsEiqilkrLsHpNIvrlidvfed..........kdhlylVlEycegGL.
                     Ei+il+ L H  I+ ++++++d+++  + +++k+  ylV+Ey++++L 
   mKIAA1791   753 --EIKILRQLTHQSIINMKEIVTDkedaldfkkdKGAFYLVFEYMDHDLm 800  

                   rlldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLK
                   +ll+             +   e+++k++++Q+ +gl+Y+H+++++HRD+K
   mKIAA1791   801 GLLESG--------LVHF--NENHIKSFMRQLMEGLDYCHKKNFLHRDIK 840  

                   PeNILldengvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvl
                    +NILl+++g++    K+aDFGlA+++s + s+++t  v T+wY++PE+l
   mKIAA1791   841 CSNILLNNRGQI----KLADFGLARLYSSeESRpYTNKVITLWYRPPELL 886  

                   lggngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgp
                   lg + y++++DvWS+G+il el+t+kp+F+      +l ql+li +i g 
   mKIAA1791   887 LGEERYTPAIDVWSCGCILGELFTKKPIFQAN---QeLAQLELISRICGS 933  

                   plefdspewdsisrse.fr.........r.l.pnlseeakdLikkcLnkD
                   p +  +p ++  +++++  ++++ +++ r+  + ++ +a+dL +++L++D
   mKIAA1791   934 PCPAVWPDVIKLPYFNtMKpkkqyrrklReEfVFIPAAALDLFDYMLALD 983  

                   PskRltaeeilqHPwf<-*
                   PskR+tae++lq +++   
   mKIAA1791   984 PSKRCTAEQALQCEFL    999  

//