hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf00986/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1790 ( 1898 res) mpf00986 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S_TKc Serine/Threonine protein kinases, catalytic 130.2 2.2e-34 1 TyrKc Tyrosine kinase, catalytic domain 78.2 1e-18 1 LRR_PS Leucine-rich repeat, plant-specific subfamil 52.2 6.8e-11 8 LRR_TYP Leucine-rich repeats, typical (most populate 49.1 5.8e-10 8 ANK ankyrin repeats 34.0 2e-05 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ANK 1/3 3 32 .. 1 30 [] 10.2 2e+02 ANK 2/3 36 66 .. 1 30 [] 11.2 1.4e+02 ANK 3/3 77 107 .. 1 30 [] 12.9 45 LRR_TYP 1/8 162 184 .. 1 24 [] 0.8 3.3e+02 LRR_PS 1/8 185 207 .. 1 24 [] 5.2 2.6e+02 LRR_TYP 2/8 185 209 .. 1 24 [] 13.6 9.1 LRR_PS 2/8 212 234 .. 1 24 [] 14.2 17 LRR_TYP 3/8 212 235 .. 1 24 [] 8.6 38 LRR_PS 3/8 263 285 .. 1 24 [] 18.9 0.72 LRR_TYP 4/8 263 285 .. 1 24 [] 23.5 0.03 LRR_PS 4/8 287 309 .. 1 24 [] 9.9 61 LRR_TYP 5/8 287 311 .. 1 24 [] 6.5 68 LRR_TYP 6/8 356 377 .. 1 24 [] 6.8 62 LRR_PS 5/8 356 379 .. 1 24 [] 0.7 9.6e+02 LRR_PS 6/8 380 402 .. 1 24 [] 3.9 3.7e+02 LRR_TYP 7/8 432 453 .. 1 24 [] 0.7 3.4e+02 LRR_PS 7/8 454 477 .. 1 24 [] 16.3 4.5 LRR_TYP 8/8 454 478 .. 1 24 [] 14.6 6.8 LRR_PS 8/8 478 500 .. 1 24 [] 5.9 2e+02 TyrKc 1/1 1126 1404 .. 1 280 [] 78.2 1e-18 S_TKc 1/1 1126 1409 .. 1 231 [] 130.2 2.2e-34 Alignments of top-scoring domains: ANK: domain 1 of 3, from 3 to 32: score 10.2, E = 2e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* +++p +Aa g+ evv++Ll++ + + mKIAA1790 3 TDDNPAVVAAHFGHAEVVRELLESLPGPCT 32 ANK: domain 2 of 3, from 36 to 66: score 11.2, E = 1.4e+02 *->dGrTpLHlAaengnlevvklLldkga.dina<-* + L lA+++g+levvklL+ + d++ mKIAA1790 36 LLNWMLALACQRGHLEVVKLLVLTHGaDPEN 66 ANK: domain 3 of 3, from 77 to 107: score 12.9, E = 45 *->dGrTpLHlAaengnlevvklLldkga.dina<-* r pL+ A++ gn++++ +Ll++ga + + mKIAA1790 77 IVRLPLYAAIKAGNEDIAIFLLRHGAyFCSY 107 LRR_TYP: domain 1 of 8, from 162 to 184: score 0.8, E = 3.3e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + +eLdLs N L sLP+ + +g mKIAA1790 162 -CQITELDLSANCLPSLPSIIPWG 184 LRR_PS: domain 1 of 8, from 185 to 207: score 5.2, E = 2.6e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L+ L+LsnN+L e+P ++ mKIAA1790 185 LINLKKLNLSNNQLG-ELPCVQSS 207 LRR_TYP: domain 2 of 8, from 185 to 209: score 13.6, E = 9.1 *->LpnLreLdLsnNqLtsLP.pgaFqg<-* L nL++L+LsnNqL +LP + + mKIAA1790 185 LINLKKLNLSNNQLGELPcVQSSDE 209 LRR_PS: domain 2 of 8, from 212 to 234: score 14.2, E = 17 *->LtsLqvLdLsnNnLsGeIPsslgn<-* +++L ++d+s+N+Ls ++P+ + mKIAA1790 212 CSRLLEIDISSNKLS-HLPPGFLH 234 LRR_TYP: domain 3 of 8, from 212 to 235: score 8.6, E = 38 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + L e d s+N+L++LPpg ++ mKIAA1790 212 CSRLLEIDISSNKLSHLPPGFLHL 235 LRR_PS: domain 3 of 8, from 263 to 285: score 18.9, E = 0.72 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++Lq+LdL++N+L+ e+P ++ mKIAA1790 263 LRKLQELDLADNRLT-ELPVQFMH 285 LRR_TYP: domain 4 of 8, from 263 to 285: score 23.5, E = 0.03 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+eLdL +N+Lt+LP + F + mKIAA1790 263 LRKLQELDLADNRLTELPVQ-FMH 285 [output cut off at A = 10 top alignments] //