hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg02878/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1787  ( 1422 res)   mpg02878

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Neuralized Neuralized                                   150.0      4e-41   5
SPRY       SPRY domain                                   -7.0       0.83   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Neuralized   1/5     178   248 ..     1    71 []    36.5  6.2e-07
Neuralized   2/5     381   451 ..     1    71 []    25.1  1.3e-05
SPRY         1/1     423   548 ..     1   154 []    -7.0     0.83
Neuralized   3/5     577   647 ..     1    71 []    29.8    4e-06
Neuralized   4/5     776   841 ..     1    71 []    51.4  1.9e-11
Neuralized   5/5     991  1058 ..     1    71 []     9.3  0.00068

Alignments of top-scoring domains:
Neuralized: domain 1 of 5, from 178 to 248: score 36.5, E = 6.2e-07
                   *->PLsRFHpnthGsNvrldddrtvAkRTr...sSFCdaitFSaRPvrIg
                      +L+ FH    G  + l+ + ++A R r++   F ++ + ++RP+r +
   mKIAA1787   178    ALL-FH-EKCGTLIKLSNNNKTAER-RrplDEFNNGVVMTNRPLRDN 221  

                   ErvclkvlkieegWsGaLRlGfTslDP<-*
                   E + +++ k    WsG +  G+T  +P   
   mKIAA1787   222 EMFEIRIDKLVDKWSGSIEIGVTTHNP    248  

Neuralized: domain 2 of 5, from 381 to 451: score 25.1, E = 1.3e-05
                   *->PLsRFHpnthGsNvrldddrtvAkR..TrsSFCdaitFSaRPvrIgE
                       L+ FHpn  G    +   +++A R++   +F  + + S R +r gE
   mKIAA1787   381    RLL-FHPN-CGQKAAITHEGRTALRphATDDFNHGVVLSSRALRDGE 425  

                   rvclkvlkieegWsGaLRlGfTslDP<-*
                    + +++ k    W G +  G+T  +P   
   mKIAA1787   426 VFQVRIDKMVDKWAGSIEIGVTTHNP    451  

SPRY: domain 1 of 1, from 423 to 548: score -7.0, E = 0.83
                   *->sGkhYfEVevdtggg.epthwrvGwat.ksvhlp.pgfdlrsskrkg
                       G   f V++d+  ++ ++++ +G++t+++++l+ p +        +
   mKIAA1787   423    DGEV-FQVRIDKMVDkWAGSIEIGVTThNPAYLQlPST-------MT 461  

                   gerllGddegswgydgsggkkyhagesg.epyglpfqe..kgdviGcflD
                   + r + ++  + g+        h+g++  ++yg  +   + gd++G  + 
   mKIAA1787   462 NLRSGTWMMTGNGV-------MHNGTTIlDEYGHNLDRlkAGDTVG-VVR 503  

                   yeagVtisFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadg
                    e+g t+ F++NG+  g       a  nv+++      +y +v l     
   mKIAA1787   504 REDG-TLHFFVNGMTQG------PAAWNVPPG------VYAVVDLY---- 536  

                   ggeairlnfgqlp<-*
                    g+a +  +  +    
   mKIAA1787   537 -GQAAQATIVDDV    548  

Neuralized: domain 3 of 5, from 577 to 647: score 29.8, E = 4e-06
                   *->PLsRFHpnthGsNvrldddrtvAkR..TrsSFCdaitFSaRPvrIgE
                       L  FH   hGsN ++   +++A R++ rs F dai+ S+R +r gE
   mKIAA1787   577    DLR-FH-QLHGSNAVITNGGRTALRhnCRSEFNDAIVISNRALRDGE 621  

                   rvclkvlkieegWsGaLRlGfTslDP<-*
                    + + + k    WsG +  G+T   P   
   mKIAA1787   622 LFEIVIQKMVDRWSGSIEAGVTAIRP    647  

Neuralized: domain 4 of 5, from 776 to 841: score 51.4, E = 1.9e-11
                   *->PLsRFHpnthGsNvrldddrtvAkRTrsSFCdaitFSaRPvrIgErv
                         RFH+   G Nv l  d+t A R  +  + +++FS   +   E +
   mKIAA1787   776    ---RFHS-MCGKNVTLEEDGTRAVR-VAGYAHGLVFSTKELKAEEVF 817  

                   clkvlkieegWsGaLRlGfTslDP<-*
                    +kv++  e W G LRlG+T l+P   
   mKIAA1787   818 EVKVEELDEKWAGSLRLGLTTLAP    841  

Neuralized: domain 5 of 5, from 991 to 1058: score 9.3, E = 0.00068
                   *->PLsRFHpnthGsNvrldddrtvAkRTrsSFCdaitFSaRPvrIgErv
                      +L  F  n hG N++l+   ++A R  +S  ++i+    P+ +   v
   mKIAA1787   991    ALE-FLEN-HGKNILLSNGNRTATR-VASYNQGIVVISQPLVPHMLV 1034 

                   clkvlkieegWsGaLRlGfTslDP<-*
                    +++    + W   L lG+  + P   
   mKIAA1787  1035 QVRIDFLNRQWTSSLVLGVITCPP    1058 

//