hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01357/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1785  ( 617 res)   mph01357

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 212.2      8e-60   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/8      40    73 ..     1    33 []    30.6  3.7e-05
Ank        2/8      82   114 ..     1    33 []    29.6  7.4e-05
Ank        3/8     115   147 ..     1    33 []    26.9  0.00048
Ank        4/8     148   180 ..     1    33 []    38.1    2e-07
Ank        5/8     181   212 ..     1    33 []    13.5      2.2
Ank        6/8     213   246 ..     1    33 []    13.4      2.3
Ank        7/8     481   526 ..     1    33 []    33.9  3.7e-06
Ank        8/8     527   559 ..     1    33 []    35.9  9.1e-07

Alignments of top-scoring domains:
Ank: domain 1 of 8, from 40 to 73: score 30.6, E = 3.7e-05
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      +G TPL +Aa++g+l++v++Ll+++ A++ +      
   mKIAA1785    40    NGATPLLMAARYGHLDMVEFLLEqCSASIEVGGS    73   

Ank: domain 2 of 8, from 82 to 114: score 29.6, E = 7.4e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G  PL  A+  g+l+vv+ Ll++GA++n ++    
   mKIAA1785    82    EGAPPLWAASAAGHLKVVQSLLNHGASVNNTTL    114  

Ank: domain 3 of 8, from 115 to 147: score 26.9, E = 0.00048
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                         TPL  A++ g+le+vk+L+++ Adl + ++   
   mKIAA1785   115    TNSTPLRAACFDGHLEIVKYLVEHKADLEVSNR    147  

Ank: domain 4 of 8, from 148 to 180: score 38.1, E = 2e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G T+L++ +++g++e++++Ll++GAd+n +     
   mKIAA1785   148    HGHTCLMISCYKGHKEIAQYLLEKGADVNRKSV    180  

Ank: domain 5 of 8, from 181 to 212: score 13.5, E = 2.2
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH  a++g+l+++k+Ll   +    +d    
   mKIAA1785   181    KGNTALHDCAESGSLDIMKMLLM-YCAKMEKDG    212  

Ank: domain 6 of 8, from 213 to 246: score 13.4, E = 2.3
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      +G+TPL  A+  g++++v +L  ++  +   + +   
   mKIAA1785   213    YGMTPLLSASVTGHTNIVDFLTHhAQTSKTERIN    246  

Ank: domain 7 of 8, from 481 to 526: score 33.9, E = 3.7e-06
                   *->dGfTPLHlAalrg.............nlevvklLlsqGAdlnaqdd<
                      + f+PLHlA+ ++    +  +  + ++l+v   L+++GAd+n++d  
   mKIAA1785   481    NNFSPLHLAVDKNttcvgrypvckfpSLQVTAILIECGADVNVRDS  526  

                   -*
                     
   mKIAA1785     -    -    

Ank: domain 8 of 8, from 527 to 559: score 35.9, E = 9.1e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      d ++PLH+Aal+++++++ lL++ GA  +a++    
   mKIAA1785   527    DDNSPLHIAALNNHPDIMNLLIKSGAHFDATNL    559  

//