hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02269/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1784 ( 1379 res) mbg02269 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- BTB Broad-Complex, Tramtrack and Bric a brac 38.2 1.1e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 320 423 .. 1 114 [] 38.2 1.1e-06 Alignments of top-scoring domains: BTB: domain 1 of 1, from 320 to 423: score 38.2, E = 1.1e-06 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. +Dv ++ + g+ ++a Hk+vL a+ +p + +++ mKIAA1784 320 SDVQFQLDS--------GEVLYA--HKFVLYAR---CPLLIQYVSTe 353 .............ieldDeallievspeaFralLnflYt.kldlpeedve + +++++++ +++ l+D vs ea +a+Ln+lY + d+p++ mKIAA1784 354 sfsseedgdltqrALLSD------VSSEAAHAFLNYLYMaDTDMPPS--- 394 nveelLelAdfldSYGqip.lvelCeefllknl<-* v +l lA ++ ++ +lv+lCe+ mKIAA1784 395 LVPDLRSLALRF----GVSdLVQLCEQVPAVVD 423 //