hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02269/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1784  ( 1379 res)   mbg02269

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  40.1    5.1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1     310   423 ..     1   135 []    40.1  5.1e-08

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 310 to 423: score 40.1, E = 5.1e-08
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      + ++ ++ +l+DV ++ +        g+ ++AHK+vL a+ p     
   mKIAA1784   310    FGAMVNNPHLSDVQFQLDS-------GEVLYAHKFVLYARCPLLIQY 349  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                    +  +++s  ee+ + +++  l+dvs+e+ +a+L+++Y + ++++     
   mKIAA1784   350 VSTESFSS--EEDGDLTQRALLSDVSSEAAHAFLNYLYMADTDMP----- 392  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         ++ v dl +lA  ++ + +lv++Ce+         
   mKIAA1784   393 ------PSLVPDLRSLA-LRFGVSDLVQLCEQVPAVVD    423  

//