hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg19640/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1781 ( 1140 res) mbg19640 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF Epidermal growth factor-like domain. 189.9 2.4e-52 17 EGF_Lam Laminin-type epidermal growth factor-like do 138.5 7.3e-37 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/17 150 178 .. 1 32 [] 17.1 2.5 EGF_Lam 1/17 157 190 .. 1 42 [] -11.2 69 EGF 2/17 189 221 .. 1 32 [] 25.7 0.0063 EGF_Lam 2/17 194 233 .. 1 42 [] 24.7 0.013 EGF 3/17 232 264 .. 1 32 [] 21.0 0.16 EGF_Lam 3/17 237 276 .. 1 42 [] 33.6 2.7e-05 EGF 4/17 275 307 .. 1 32 [] 28.8 0.00073 EGF_Lam 4/17 280 319 .. 1 42 [] 2.3 5.6 EGF 5/17 318 350 .. 1 32 [] 23.6 0.028 EGF_Lam 5/17 323 362 .. 1 42 [] 24.3 0.017 EGF 6/17 361 393 .. 1 32 [] 22.5 0.057 EGF_Lam 6/17 366 406 .. 1 42 [] 23.3 0.033 EGF 7/17 405 439 .. 1 32 [] 2.2 1.6e+02 EGF_Lam 7/17 410 451 .. 1 42 [] 25.9 0.0057 EGF 8/17 450 482 .. 1 32 [] 22.0 0.082 EGF_Lam 8/17 455 494 .. 1 42 [] 12.1 0.88 EGF 9/17 493 525 .. 1 32 [] 22.6 0.055 EGF_Lam 9/17 498 537 .. 1 42 [] 16.4 0.4 EGF 10/17 536 568 .. 1 32 [] 18.5 0.97 EGF_Lam 10/17 541 580 .. 1 42 [] 2.4 5.4 EGF 11/17 579 611 .. 1 32 [] 6.1 73 EGF_Lam 11/17 584 623 .. 1 42 [] 20.3 0.19 EGF 12/17 622 654 .. 1 32 [] 20.6 0.22 EGF_Lam 12/17 627 666 .. 1 42 [] 22.4 0.065 EGF 13/17 665 699 .. 1 32 [] 14.9 11 EGF_Lam 13/17 669 711 .. 1 42 [] 5.1 3.3 EGF 14/17 710 742 .. 1 32 [] 21.4 0.12 EGF_Lam 14/17 715 754 .. 1 42 [] 17.3 0.34 EGF 15/17 753 785 .. 1 32 [] 14.9 11 EGF_Lam 15/17 758 797 .. 1 42 [] 13.9 0.63 EGF 16/17 796 828 .. 1 32 [] 18.0 1.3 EGF_Lam 16/17 801 840 .. 1 42 [] 29.7 0.00039 EGF 17/17 839 871 .. 1 32 [] 17.8 1.5 EGF_Lam 17/17 844 873 .. 1 42 [] 1.1 7 Alignments of top-scoring domains: EGF: domain 1 of 17, from 150 to 178: score 17.1, E = 2.5 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C + C +G +C++ tC+C pG+ g+ C mKIAA1781 150 LCTeECMHG------RCVsPDTChCE-PGWGGpDCS 178 EGF_Lam: domain 1 of 17, from 157 to 190: score -11.2, E = 69 *->CdCnlpppvG.CdptGqClnCkpnttGGrrCdderCapGyy..gC<- + G+C + C+ C p+ G + C C +++++C mKIAA1781 157 ---H-----GrCVSPDTCH-CEPGWGG-PDCSSG-CDSEHWgpHC 190 * mKIAA1781 - - EGF: domain 2 of 17, from 189 to 221: score 25.7, E = 0.0063 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ C+nG + C + + C C+ pG++g rCe mKIAA1781 189 HCSnrcQCQNG-----ALCNpiTGACvCA-PGFRGwRCE 221 EGF_Lam: domain 2 of 17, from 194 to 233: score 24.7, E = 0.013 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy..g C+C ++ C+p tG C+ C p+ G rC+ e CapG +++g mKIAA1781 194 CQCQ-----NgalCNPiTGACV-CAPGFRG-WRCE-ELCAPGTHgkG 232 C<-* C mKIAA1781 233 C 233 EGF: domain 3 of 17, from 232 to 264: score 21.0, E = 0.16 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ C++G + C +++ +C C+ pGytg +Ce mKIAA1781 232 GCQllcQCHHG-----ASCDprTGEClCA-PGYTGvYCE 264 EGF_Lam: domain 3 of 17, from 237 to 276: score 33.6, E = 2.7e-05 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+C+ +G +Cdp+tG Cl C p++tG C+ e C pG ++ +C mKIAA1781 237 CQCH----HGasCDPrTGECL-CAPGYTG-VYCE-ELCPPGSHgaHC 276 <-* mKIAA1781 - - EGF: domain 4 of 17, from 275 to 307: score 28.8, E = 0.00073 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + pC+nG GtC++ + +C Cp pG+tg C mKIAA1781 275 HCElrcPCQNG-----GTCHhiTGECaCP-PGWTGaVCA 307 EGF_Lam: domain 4 of 17, from 280 to 319: score 2.3, E = 5.6 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C +G+C+ tG C C p+ tG C + C pG ++++C mKIAA1781 280 CPCQ---NGGtCHHiTGECA-CPPGWTG-AVCAQP-CPPGTFgqNC 319 -* mKIAA1781 - - EGF: domain 5 of 17, from 318 to 350: score 23.6, E = 0.028 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ pC++G G+C + + +C+C +Gy+g+rC+ mKIAA1781 318 NCSqdcPCHHG-----GQCDhvTGQChCT-AGYMGdRCQ 350 EGF_Lam: domain 5 of 17, from 323 to 362: score 24.3, E = 0.017 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C+C+ +G+Cd tGqC+ C +++G +rC +e C G ++ C mKIAA1781 323 CPCH---HGGqCDHvTGQCH-CTAGYMG-DRCQEE-CPFGTFgfLC 362 -* mKIAA1781 - - [output cut off at A = 10 top alignments] //