hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01642/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1775  ( 918 res)   mbg01642

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                              321.5    5.9e-92   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/6     118   194 ..     1   121 []    37.5  1.9e-06
CA         2/6     218   306 ..     1   121 []    83.8  2.1e-20
CA         3/6     330   413 ..     1   121 []    56.1  4.4e-12
CA         4/6     444   532 ..     1   121 []    52.4    6e-11
CA         5/6     556   636 ..     1   121 []    78.1  1.1e-18
CA         6/6     653   744 ..     1   121 []    36.5  3.6e-06

Alignments of top-scoring domains:
CA: domain 1 of 6, from 118 to 194: score 37.5, E = 1.9e-06
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
                      ++ tD+  +             ++Y+i+ ++++++ Fs+dp+ G+  
   mKIAA1775   118    LNGTDPEGD------P------ISYHISFdpstrsVFSVDPNFGN-- 150  

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                            it++++LDRE           +e + ++  +Dg        
   mKIAA1775   151 ---------ITLVEELDRERE---------DEIEAIISISDGL------- 175  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                    v++ V+D ND aP   
   mKIAA1775   176 -----------NLVAEKVVILVTDANDEAP    194  

CA: domain 2 of 6, from 218 to 306: score 83.8, E = 2.1e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      v+A D+D+g   + g       vtYs+ + ++++Fs+d+++G     
   mKIAA1775   218    VQAEDKDTG---SGGS------VTYSLQNlhssKFSMDRHSG----- 250  

                   LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                        + + + ++LD+E+            + +tv+A+DgGg  +g++  
   mKIAA1775   251 ----VLRLQAGATLDYEKS---------RAHYITVIAKDGGGRLRGADMV 287  

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                            +s+t+tvt++V+Dv D aP   
   mKIAA1775   288 ---------FSATTTVTINVEDVQDTAP    306  

CA: domain 3 of 6, from 330 to 413: score 56.1, E = 4.4e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      v+A+D D g      +      + Y++l+++++ F+I++++G     
   mKIAA1775   330    VVAIDGDRG---KPNH------ILYRLLNesdgIFEINETSG----- 362  

                   LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                          i+++++     +         ++Y+L v++t  ++p       
   mKIAA1775   363 ------AISVLQSPALLRR---------EVYELHVQVTEVNSPG------ 391  

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                         +p  ++t++vt++++D N ++P   
   mKIAA1775   392 ------SPAAQATVPVTIRIVDLNNHPP    413  

CA: domain 4 of 6, from 444 to 532: score 52.4, E = 6e-11
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      +++ D D+g    N+k      +  +++++++ F++ p+t  n +  
   mKIAA1775   444    ITVNDSDQG---ANAK------FNLRLVGpggIFRVVPQTVLNEA-- 479  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                     + ii+  ++++D+E+          +  t++  A   ++p +      
   mKIAA1775   480 -QVTIIVENSAAIDFEKS---------KLLTFKLLAIEVNTPEK------ 513  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                           +ssta +++++lD NDN P   
   mKIAA1775   514 --------FSSTADIVIQLLDTNDNVP    532  

CA: domain 5 of 6, from 556 to 636: score 78.1, E = 1.1e-18
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      v+A+D+D+g   + gk      v+Ysi +++++lF I+p+tG     
   mKIAA1775   556    VTAVDPDTG---PWGK------VHYSIYGtgsdLFLIHPSTG----- 588  

                   Lvkleiiittt..kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          i+t++ ++LD E +         s+Y++ v+A D++g      
   mKIAA1775   589 ------LIYTQpwASLDAEGT---------SRYNFYVKAEDMDG------ 617  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              + s a+v vt+lDvND+ P   
   mKIAA1775   618 -----------RYSLAEVFVTLLDVNDHYP    636  

CA: domain 6 of 6, from 653 to 744: score 36.5, E = 3.6e-06
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      + AtD D++  ++N        v Ysi++ ++ + F+Id++tG++ +
   mKIAA1775   653    IEATDQDAE--EPNNL------VDYSITRaepvnVFDIDAHTGEIRL 691  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                           i+++++L   + +++       + +L+v+A+D+G+p+     
   mKIAA1775   692 -----KNSIRSLEALHNITPSGD------YSWSLQVQAKDRGSPS----- 725  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+ta + + ++D         
   mKIAA1775   726 ----------FSTTALLKIDITDTERLSR    744  

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