hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01642/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1775  ( 918 res)   mbg01642

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cadherin Cadherin domain                                248.0    1.3e-70   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cadherin   1/5     101   187 ..     1   107 []    33.7  4.1e-06
Cadherin   2/5     201   299 ..     1   107 []    69.9  5.5e-17
Cadherin   3/5     313   406 ..     1   107 []    53.8  3.8e-12
Cadherin   4/5     539   629 ..     1   107 []    77.9  2.1e-19
Cadherin   5/5     636   737 ..     1   107 []    25.6   0.0012

Alignments of top-scoring domains:
Cadherin: domain 1 of 5, from 101 to 187: score 33.7, E = 4.1e-06
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF
                        +s+pE++pvG++v t++ tD+     p   i+Y i+ +++++  F
   mKIAA1775   101    ALFSLPEDTPVGSHVYTLNGTDPE--GDP---ISYHISFDPStRSVF 142  

                   rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl
                   ++dp+ G     i+++++LDRE    +e e +++ +D+          +l
   mKIAA1775   143 SVDPNFGN----ITLVEELDRERE--DEIEAIISISDGL---------NL 177  

                   sstatvtitVl<-*
                    ++  v+i V+   
   mKIAA1775   178 VAE-KVVILVT    187  

Cadherin: domain 2 of 5, from 201 to 299: score 69.9, E = 5.5e-17
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                      y ++vpEn p G+++  v+A D+D  +g  g+++Ys+ + + + +F+
   mKIAA1775   201    YIIRVPENIPAGSSIFKVQAEDKD--TGSGGSVTYSLQNLH-SSKFS 244  

                   IdpdtGdnegiisttkp..LDREeifngeYeLtveAtDadpllasgggpp
                   +d+++G+    +++++  +LD+E+   + + +tv+A+D+       gg+ 
   mKIAA1775   245 MDRHSGV----LRLQAGatLDYEKS--RAHYITVIAKDG-------GGRL 281  

                   l......sstatvtitVl<-*
                   ++ +   s+t+tvti+V+   
   mKIAA1775   282 RgadmvfSATTTVTINVE    299  

Cadherin: domain 3 of 5, from 313 to 406: score 53.8, E = 3.8e-12
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                      y + v E++ +G+evltv A+D D  +g    i Y++l+ + +g+F+
   mKIAA1775   313    YYGYVYEDTLPGSEVLTVVAIDGD--RGKPNHILYRLLNES-DGIFE 356  

                   IdpdtGdnegiisttkp...LDREeifngeYeLtveAtDadpllasgggp
                   I++ +G     is+ +++  L R     + YeL+v +t       s+g+p
   mKIAA1775   357 INETSGA----ISVLQSpalLRR-----EVYELHVQVTEV----NSPGSP 393  

                   plsstatvtitVl<-*
                   +  +t++vti +    
   mKIAA1775   394 AAQATVPVTIRIV    406  

Cadherin: domain 4 of 5, from 539 to 629: score 77.9, E = 2.1e-19
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                      y a++pEnap G+ v  vtA+D+D  +gp g+++Ysi g++ ++ F 
   mKIAA1775   539    YIARIPENAPGGSNVVAVTAVDPD--TGPWGKVHYSIYGTG-SDLFL 582  

                   IdpdtGdnegiistt..kpLDREeifngeYeLtveAtDadpllasgggpp
                   I+p tG     i+t++ ++LD E +  ++Y+++v+A D+d         +
   mKIAA1775   583 IHPSTGL----IYTQpwASLDAEGT--SRYNFYVKAEDMD---------G 617  

                   lsstatvtitVl<-*
                   ++s a+v +t+l   
   mKIAA1775   618 RYSLAEVFVTLL    629  

Cadherin: domain 5 of 5, from 636 to 737: score 25.6, E = 0.0012
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                      +++sv E + v  ++l + AtD D  + pN  + Ysi++ +p + F 
   mKIAA1775   636    PQFSVQEKTMVLGTPLKIEATDQDA-EEPNNLVDYSITRAEPVNVFD 681  

                   IdpdtGdnegiisttkpLDREeif.........ngeYeLtveAtDadpll
                   Id +tG+    i+++ ++     +  ++ +++++   +L v A+D+    
   mKIAA1775   682 IDAHTGE----IRLKNSIRS--LEalhnitpsgDYSWSLQVQAKDR---- 721  

                   asgggpplsstatvtitVl<-*
                      g+p+ s+ta + i ++   
   mKIAA1775   722 ---GSPSFSTTALLKIDIT    737  

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