hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg00072/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1769  ( 1622 res)   mtg00072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RNB      RNB-like protein                               107.3    2.9e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RNB        1/1     464   684 ..     1   248 []   107.3  2.9e-28

Alignments of top-scoring domains:
RNB: domain 1 of 1, from 464 to 684: score 107.3, E = 2.9e-28
                   *->rDlrdllivTIkDpetarDfWvDDAlsvkkldnntdGtyeLgVHIAD
                      +D+r+ l++T+ Dp +a  +  DDAlsv+ l+      ye+ VHIAD
   mKIAA1769   464    EDYRHFLTFTV-DPQGACNL--DDALSVRDLGP----VYEVAVHIAD 503  

                   VthyVkpgSsLDkEAakRgtsvYLPqkYvvPMLPeeLsdglCSLkpnedR
                   V+++V+++ +LD EA++ gt  Y P++  v MLP +L+++  SL p++dR
   mKIAA1769   504 VASLVPKDGALDVEARQQGTVFYAPNREPVLMLPASLCQDALSLLPGQDR 553  

                   lalScemtlDesGkeikdvkigpSvIrskarltYeevdeiL........e
                   la+S ++t+ + G++ik+ ++ pS+Irs+ +l+Yee+ e+++++++ + e
   mKIAA1769   554 LAISLFLTMEKGGGQIKSLRFAPSIIRSDRQLSYEEAEELIkrhpgaglE 603  

                   tkeesatkdesldseseplvesLrllfelakklrkkRlkrGlaldlFesp
                    +            + + ++  + + + ++  lr++Rl+           
   mKIAA1769   604 LP-----------AHLDSVEACVVAACYFSWMLRRQRLSAA--------- 633  

                   elkfslDdeegpiepieieieersdaesllieEfMllANeaVArhlyeef
                          + +    p e + +  + a+ + ++E M+  N+ VA++l ++ 
   mKIAA1769   634 -------CYYE--PPDEDSVLGFRTAHIM-VQEYMIQFNSHVAEFLVSNK 673  

                   gipal..yRrH<-*
                   + + l+++R +   
   mKIAA1769   674 HTQTLtpLRWQ    684  

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