hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj69272/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1766  ( 618 res)   mfj69272

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DENN     DENN (AEX-3) domain                            285.8    5.6e-82   1
uDENN    uDENN domain                                   155.9      7e-43   1
dDENN    dDENN domain                                    97.4    2.9e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
uDENN      1/1      41   126 ..     1   108 []   155.9    7e-43
DENN       1/1     155   337 ..     1   231 []   285.8  5.6e-82
dDENN      1/1     390   459 ..     1    81 []    97.4  2.9e-25

Alignments of top-scoring domains:
uDENN: domain 1 of 1, from 41 to 126: score 155.9, E = 7e-43
                   *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy
                      +arL+Dyf+vVg+d+++         g++e+l++++++FP       
   mKIAA1766    41    MARLADYFIVVGYDHEK--------PGPGEGLGKIIQRFP------- 72   

                   kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk
                   ++d++d+pf +++i++FC+P g+++ ++r++     p+fF++vLTd+Ds+
   mKIAA1766    73 QQDWDDTPF-PQGIELFCQPGGWHLSRERKQ-----PTFFVVVLTDIDSD 116  

                   RtryGfCltfy<-*
                   R +y+ Cltfy   
   mKIAA1766   117 R-HYCSCLTFY    126  

DENN: domain 1 of 1, from 155 to 337: score 285.8, E = 5.6e-82
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                      ++pks++l+Srl ++e+Fr++L ++++v+++s+ +s           
   mKIAA1766   155    FAPKSLVLVSRLDYPEIFRACLGLIYTVYVDSMSVS----------- 190  

                   srdtvwrvltgvlevLhdirElEslirnLlyeVplPapGktirvkvvvls
                                        lEsli nL+ +  +Pa G ++++++ +  
   mKIAA1766   191 ---------------------LESLIANLCAC-LVPAAGGSQKLFSLG-- 216  

                   sgvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl
                          +++++l+++p++++lp++++++a+lF++LG++nvl Lf+a+L+
   mKIAA1766   217 -------AGDRQLIQTPLHDSLPVTGTSVALLFQQLGIQNVLNLFCAVLT 259  

                   ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc
                   E+k+L++S +++rLs++c+Al +L++Pl++++pyIP+LPa+Ll   +vL+
   mKIAA1766   260 ENKVLLHSASFQRLSDACRALESLMFPLKYSYPYIPILPAQLL---EVLS 306  

                   APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   +PtPF+IGVhs f+++v++l+   dv++ DLD +   
   mKIAA1766   307 SPTPFIIGVHSIFKTDVHELL---DVIIADLDGG    337  

dDENN: domain 1 of 1, from 390 to 459: score 97.4, E = 2.9e-25
                   *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke
                      ld++vr++FLr+F a+l++gYr++L  +r++ e      +v++F+k 
   mKIAA1766   390    LDKEVRAVFLRLF-AQLFQGYRSCLQLIRIHAE------PVIHFHKT 429  

                   aFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   aFL++r ++++ +Fl+++l  +   +Fa+F+ eR   
   mKIAA1766   430 AFLGQRGLVEN-DFLTKVLNGM---AFAGFVSER    459  

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